RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 CCL27Q9Y4X3 112 aa11.5□□□□□ -0.57
UPF1-203ENST00000594504 APCP25054 2843 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 GNG14A0A1W2PPG7 69 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 C1orf226A1L170 272 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 GLOD5A6NK44 160 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 TMEM233B4DJY2 109 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 BCKDKO14874 412 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 RGS14O43566 566 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 GPR75O95800 540 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 COX7A2P14406 83 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 ENDOUP21128 410 aaKnown RBP11.49□□□□□ -0.57
UPF1-203ENST00000594504 PRPH2P23942 346 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 TIA1P31483 386 aaKnown RBP eCLIP11.49□□□□□ -0.57
UPF1-203ENST00000594504 ADH7P40394 386 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 GSTM5P46439 218 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 STT3AP46977 705 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 ZFP36L2P47974 494 aaKnown RBP11.49□□□□□ -0.57
UPF1-203ENST00000594504 DLX5P56178 289 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 WDR4P57081 412 aaKnown RBP11.49□□□□□ -0.57
UPF1-203ENST00000594504 ABCE1P61221 599 aaKnown RBP11.49□□□□□ -0.57
UPF1-203ENST00000594504 RAE1P78406 368 aaKnown RBP11.49□□□□□ -0.57
UPF1-203ENST00000594504 PLIN5Q00G26 463 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 BTKQ06187 659 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 MPEG1Q2M385 716 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 ZNF791Q3KP31 576 aaPredicted RBP11.49□□□□□ -0.57
UPF1-203ENST00000594504 UGT3A2Q3SY77 523 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 CES4AQ5XG92 561 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 SLC22A10Q63ZE4 541 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 TMEM200AQ86VY9 491 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 KIRREL3Q8IZU9 778 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 GOLM1Q8NBJ4 401 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 AGR3Q8TD06 166 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 TWIST2Q8WVJ9 160 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 TM4SF18Q96CE8 201 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 RBM18Q96H35 190 aaKnown RBP11.49□□□□□ -0.57
UPF1-203ENST00000594504 SGCZQ96LD1 299 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 ZNF559Q9BR84 538 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 PELOQ9BRX2 385 aaKnown RBP11.49□□□□□ -0.57
UPF1-203ENST00000594504 TUBB1Q9H4B7 451 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 PROK2Q9HC23 129 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 SPRR3Q9UBC9 169 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 COPS7AQ9UBW8 275 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 PCDHA9Q9Y5H5 950 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 PTGDR2Q9Y5Y4 395 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.49□□□□□ -0.57
UPF1-203ENST00000594504 DNAJC13O75165 2243 aa11.49□□□□□ -0.57
UPF1-203ENST00000594504 NINQ8N4C6 2090 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 TRGV5A0A0B4J1U4 118 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 A0A1W2PS29 197 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 OR14I1A6ND48 311 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 AQP7O14520 342 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 PGRMC2O15173 223 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 DYRK3O43781 588 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 LYPLA1O75608 230 aaPredicted RBP11.48□□□□□ -0.57
UPF1-203ENST00000594504 IGKV3-11P04433 115 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 ANXA4P09525 319 aaPredicted RBP11.48□□□□□ -0.57
UPF1-203ENST00000594504 LINC00032P0C843 101 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 DRD2P14416 443 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 ALOX15P16050 662 aaPredicted RBP11.48□□□□□ -0.57
UPF1-203ENST00000594504 BGNP21810 368 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 ERVK-8P63133 956 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 STX3Q13277 289 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 ZNF267Q14586 743 aaPredicted RBP11.48□□□□□ -0.57
UPF1-203ENST00000594504 HYAL4Q2M3T9 481 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 SLC48A1Q6P1K1 146 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 TMEM64Q6YI46 380 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 B3GNT6Q6ZMB0 384 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 SPNS3Q6ZMD2 512 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 DDIASQ8IXT1 998 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 ST13P4Q8IZP2 240 aaPredicted RBP11.48□□□□□ -0.57
UPF1-203ENST00000594504 OR4K14Q8NGD5 310 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 RAB3IL1Q8TBN0 382 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 MGARPQ8TDB4 240 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 JSRP1Q96MG2 331 aaPredicted RBP11.48□□□□□ -0.57
UPF1-203ENST00000594504 CCT7Q99832 543 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 LRTM1Q9HBL6 345 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 SH2D2AQ9NP31 389 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 PFDN4Q9NQP4 134 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 C1orf109Q9NX04 203 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 ZDHHC2Q9UIJ5 367 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 ERVK-19Q9WJR5 959 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 DLGAP4Q9Y2H0 992 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 EPB41L3Q9Y2J2 1087 aaPredicted RBP11.48□□□□□ -0.57
UPF1-203ENST00000594504 MED13LQ71F56 2210 aa11.48□□□□□ -0.57
UPF1-203ENST00000594504 FIGNL2A6NMB9 653 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 HMGB1P1B2RPK0 211 aaPredicted RBP11.47□□□□□ -0.57
UPF1-203ENST00000594504 KDM4EB2RXH2 506 aaPredicted RBP11.47□□□□□ -0.57
UPF1-203ENST00000594504 PIP5K1BO14986 540 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 ITM2AO43736 263 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 SUSD5O60279 629 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 OR10H2O60403 315 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 DIAPH2O60879 1101 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 SEC22BO75396 215 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 CLPSP04118 112 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 IL3P08700 152 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 SLC35E2P0CK97 266 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 PIK3R1P27986 724 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 GALNSP34059 522 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 SLC1A6P48664 564 aa11.47□□□□□ -0.57
UPF1-203ENST00000594504 TRPC1P48995 793 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms