RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 FGF17O60258 216 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 APEX1P27695 318 aaKnown RBP14.35□□□□□ -0.11
VPS53-218ENST00000575207 NEK2P51955 445 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 CHN2P52757 468 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 PLA2G16P53816 162 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 CTBP2P56545 445 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 NRG3P56975 720 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 TSC22D1Q15714 1073 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 SLC18A3Q16572 532 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 SPRED3Q2MJR0 410 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 ADPRMQ3LIE5 342 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 C1QL4Q86Z23 238 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 OR2L5Q8NG80 312 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 HGDQ93099 445 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 TSNARE1Q96NA8 513 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 NODALQ96S42 347 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 CDC42EP4Q9H3Q1 356 aaKnown RBP14.35□□□□□ -0.11
VPS53-218ENST00000575207 COPS7BQ9H9Q2 264 aaPredicted RBP14.35□□□□□ -0.11
VPS53-218ENST00000575207 PELI2Q9HAT8 420 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 FBXL2Q9UKC9 423 aa14.35□□□□□ -0.11
VPS53-218ENST00000575207 LILRA1O75019 489 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 AIFM1O95831 613 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 NAGAP17050 411 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 IL32P24001 234 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 ARNTP27540 789 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 ABCD3P28288 659 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 FABP6P51161 128 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 RPS13P62277 151 aaKnown RBP14.34□□□□□ -0.11
VPS53-218ENST00000575207 PLIN5Q00G26 463 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 DUPD1Q68J44 220 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 ZNF544Q6NX49 715 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 SHQ1Q6PI26 577 aaKnown RBP14.34□□□□□ -0.11
VPS53-218ENST00000575207 CCDC25Q86WR0 208 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 OR4N5Q8IXE1 308 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 DOK4Q8TEW6 326 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 DTNBP1Q96EV8 351 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 PARVBQ9HBI1 364 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 FBXO34Q9NWN3 711 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 XPR1Q9UBH6 696 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 CLEC4AQ9UMR7 237 aa14.34□□□□□ -0.11
VPS53-218ENST00000575207 GOLGA8KD6RF30 607 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 GOLGA8TH3BQL2 631 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 VAPBO95292 243 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 TBX6O95947 436 aaPredicted RBP14.33□□□□□ -0.12
VPS53-218ENST00000575207 PLGP00747 810 aaPredicted RBP14.33□□□□□ -0.12
VPS53-218ENST00000575207 ZBED6P86452 979 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 CHRNB3Q05901 458 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 SP140Q13342 867 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 ZNF267Q14586 743 aaPredicted RBP14.33□□□□□ -0.12
VPS53-218ENST00000575207 PCID2Q5JVF3 399 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 DESI1Q6ICB0 168 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 Q6ZSR9 355 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 NUP54Q7Z3B4 507 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 GLCCI1Q86VQ1 547 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 CPNE9Q8IYJ1 553 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 PRR22Q8IZ63 422 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 METTL25Q8N6Q8 603 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 CCT6BQ92526 530 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 KCNJ9Q92806 393 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 NXNL1Q96CM4 212 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 MAPKAP1Q9BPZ7 522 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 STMN4Q9H169 189 aaPredicted RBP14.33□□□□□ -0.12
VPS53-218ENST00000575207 KLRF1Q9NZS2 232 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 EFR3BQ9Y2G0 817 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 DHRS7Q9Y394 339 aa14.33□□□□□ -0.12
VPS53-218ENST00000575207 SBDSQ9Y3A5 250 aaKnown RBP eCLIP14.33□□□□□ -0.12
VPS53-218ENST00000575207 PPM1BO75688 479 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 C8GP07360 202 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 NMBRP28336 390 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 GDF10P55107 478 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 COPS2P61201 443 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 IL13RA1P78552 427 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 CARTPTQ16568 116 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 DEPDC1Q5TB30 811 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 NXPE4Q6UWF7 544 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 TMPRSS11BQ86T26 416 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 TBC1D1Q86TI0 1168 aaPredicted RBP14.32□□□□□ -0.12
VPS53-218ENST00000575207 PALM2Q8IXS6 379 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 ST13P4Q8IZP2 240 aaPredicted RBP14.32□□□□□ -0.12
VPS53-218ENST00000575207 BBOF1Q8ND07 529 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 C17orf47Q8NEP4 570 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 TTLQ8NG68 377 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 ANKRD7Q92527 254 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 GFM2Q969S9 779 aaKnown RBP14.32□□□□□ -0.12
VPS53-218ENST00000575207 ADIPOR1Q96A54 375 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 REXO4Q9GZR2 422 aaKnown RBP14.32□□□□□ -0.12
VPS53-218ENST00000575207 GOLPH3Q9H4A6 298 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 FOLH1BQ9HBA9 442 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 PRDM7Q9NQW5 492 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 DDX28Q9NUL7 540 aaKnown RBP14.32□□□□□ -0.12
VPS53-218ENST00000575207 DKKL1Q9UK85 242 aa14.32□□□□□ -0.12
VPS53-218ENST00000575207 HIST1H2AGP0C0S8 130 aaPredicted RBP14.31□□□□□ -0.12
VPS53-218ENST00000575207 ALOX15P16050 662 aaPredicted RBP14.31□□□□□ -0.12
VPS53-218ENST00000575207 KRT15P19012 456 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 TPSB2P20231 275 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 HIST1H2ADP20671 130 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 TCEA1P23193 301 aaKnown RBP14.31□□□□□ -0.12
VPS53-218ENST00000575207 GIFP27352 417 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 SLC6A8P48029 635 aa14.31□□□□□ -0.12
VPS53-218ENST00000575207 RPS3AP61247 264 aaKnown RBP14.31□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 47 ms