RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 RHOXF2BP0C7M4 288 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 CPN1P15169 458 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 SOX18P35713 384 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 ARL1P40616 181 aaPredicted RBP19.2■□□□□ 0.66
VPS53-216ENST00000574029 TRAF3Q13114 568 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 RCAN2Q14206 197 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 DEFB113Q30KQ7 82 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 DESI1Q6ICB0 168 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 FAM111BQ6SJ93 734 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 NODALQ96S42 347 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 LRRC1Q9BTT6 524 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 ITPAQ9BY32 194 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 VPS11Q9H270 941 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 PLEKHF2Q9H8W4 249 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 MAT2BQ9NZL9 334 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 PCTPQ9UKL6 214 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 TMCO1Q9UM00 188 aa19.2■□□□□ 0.66
VPS53-216ENST00000574029 C1orf226A1L170 272 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 EEF1E1-BLOC1S5C9J1V9 151 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 STX16-NPEPL1H3BU86 382 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 STX16O14662 325 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 EEF1E1O43324 174 aaKnown RBP19.19■□□□□ 0.66
VPS53-216ENST00000574029 ICOSLGO75144 302 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 TMIGD3P0DMS9 266 aaPredicted RBP19.19■□□□□ 0.66
VPS53-216ENST00000574029 CYP4B1P13584 511 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 SLCO1A2P46721 670 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 MAPK12P53778 367 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 IFT88Q13099 833 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 SNTA1Q13424 505 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 UAP1Q16222 522 aaPredicted RBP19.19■□□□□ 0.66
VPS53-216ENST00000574029 NNATQ16517 81 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 GGTA1PQ4G0N0 100 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 FBXW10Q5XX13 1052 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 TTC19Q6DKK2 380 aaPredicted RBP19.19■□□□□ 0.66
VPS53-216ENST00000574029 CTHRC1Q96CG8 243 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 OMA1Q96E52 524 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 PHF21BQ96EK2 531 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 LCORQ96JN0 433 aaPredicted RBP19.19■□□□□ 0.66
VPS53-216ENST00000574029 NSUN5Q96P11 429 aaKnown RBP19.19■□□□□ 0.66
VPS53-216ENST00000574029 OSBPL11Q9BXB4 747 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 BRINP2Q9C0B6 783 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 MPDZO75970 2070 aa19.19■□□□□ 0.66
VPS53-216ENST00000574029 ABCA4P78363 2273 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 C2orf72A6NCS6 295 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 GOLGA6L10A6NI86 522 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 ACOX3O15254 700 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 GUCY1B2O75343 617 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 RBP1P09455 135 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 CSNK2A2P19784 350 aaPredicted RBP19.18■□□□□ 0.66
VPS53-216ENST00000574029 FOXF2Q12947 444 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 KEAP1Q14145 624 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 EXOSC7Q15024 291 aaKnown RBP19.18■□□□□ 0.66
VPS53-216ENST00000574029 C8orf74Q6P047 294 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 COMMD6Q7Z4G1 85 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 ADGRE4PQ86SQ3 457 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 WDSUB1Q8N9V3 476 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 SIMC1Q8NDZ2 872 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 ZFP3Q96NJ6 502 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 UCN2Q96RP3 112 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 TUBA1CQ9BQE3 449 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 OR2B2Q9GZK3 357 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 GALNT9Q9HCQ5 603 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 BCAP29Q9UHQ4 241 aa19.18■□□□□ 0.66
VPS53-216ENST00000574029 EXO1Q9UQ84 846 aaKnown RBP19.18■□□□□ 0.66
VPS53-216ENST00000574029 CLCA1A8K7I4 914 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 UGT2B11O75310 529 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 CBR3O75828 277 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 CBX7O95931 251 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 CTAGE8P0CG41 777 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 GCKP35557 465 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 DEKP35659 375 aaKnown RBP19.17■□□□□ 0.66
VPS53-216ENST00000574029 FEN1P39748 380 aaKnown RBP19.17■□□□□ 0.66
VPS53-216ENST00000574029 MAGEA12P43365 314 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 PLCXD2Q0VAA5 305 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 GALNT1Q10472 559 aaPredicted RBP19.17■□□□□ 0.66
VPS53-216ENST00000574029 CTAGE4Q8IX94 777 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 MMP21Q8N119 569 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 OR4F6Q8NGB9 312 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 ISL2Q96A47 359 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 TM4SF18Q96CE8 201 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 TM9SF2Q99805 663 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 SFXN3Q9BWM7 321 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 SERHLQ9NQF3 203 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 ZDHHC18Q9NUE0 388 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 SLC12A4Q9UP95 1085 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 MAPRE3Q9UPY8 281 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 PLLPQ9Y342 182 aa19.17■□□□□ 0.66
VPS53-216ENST00000574029 TO15178 435 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 ERN1O75460 977 aaKnown RBP19.16■□□□□ 0.66
VPS53-216ENST00000574029 ERAL1O75616 437 aaKnown RBP19.16■□□□□ 0.66
VPS53-216ENST00000574029 RCBTB2O95199 551 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 HRGP04196 525 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 DRD5P21918 477 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 PPICP45877 212 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 DCAF7P61962 342 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 SLC7A5Q01650 507 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 DUSP2Q05923 314 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 GLE1Q53GS7 698 aaKnown RBP19.16■□□□□ 0.66
VPS53-216ENST00000574029 SGO1Q5FBB7 561 aa19.16■□□□□ 0.66
VPS53-216ENST00000574029 MILR1Q7Z6M3 343 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms