RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 NOXRED1Q6NXP6 359 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 TICAM1Q8IUC6 712 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 SAMD14Q8IZD0 417 aaPredicted RBP14.38□□□□□ -0.11
VPS39-203ENST00000561797 FAM9CQ8IZT9 166 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 C17orf47Q8NEP4 570 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 ZNF675Q8TD23 568 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 MYNNQ9NPC7 610 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 MIEF1Q9NQG6 463 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 PNPLA3Q9NST1 481 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 EHD3Q9NZN3 535 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 SENP1Q9P0U3 644 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 PRODH2Q9UF12 536 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 CCL27Q9Y4X3 112 aa14.38□□□□□ -0.11
VPS39-203ENST00000561797 NAV2Q8IVL1 2488 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 TRGV5A0A0B4J1U4 118 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 LRRC3CA6NJW4 275 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 RGS14O43566 566 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 PPM1BO75688 479 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 CHEK2O96017 543 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 JUNP05412 331 aaKnown RBP14.37□□□□□ -0.11
VPS39-203ENST00000561797 ABCB1P08183 1280 aaPredicted RBP14.37□□□□□ -0.11
VPS39-203ENST00000561797 LINC00032P0C843 101 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 GDF1P27539 372 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 MPIP34949 423 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 PPICP45877 212 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 RPP38P78345 283 aaKnown RBP14.37□□□□□ -0.11
VPS39-203ENST00000561797 GXYLT1Q4G148 440 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 EMC4Q5J8M3 183 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 TBCELQ5QJ74 424 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 ZCCHC23Q6ZST2 131 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 MARVELD2Q8N4S9 558 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 MREGQ8N565 214 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 FAM76AQ8TAV0 307 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 AGR3Q8TD06 166 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 PHF10Q8WUB8 498 aaKnown RBP14.37□□□□□ -0.11
VPS39-203ENST00000561797 ZBTB9Q96C00 473 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 SDCCAG3Q96C92 435 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 OMA1Q96E52 524 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 HSPBAP1Q96EW2 488 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 EGLN2Q96KS0 407 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 ZNF597Q96LX8 424 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 RILPQ96NA2 401 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 TRMOQ9BU70 441 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 TP63Q9H3D4 680 aaPredicted RBP14.37□□□□□ -0.11
VPS39-203ENST00000561797 ZNF703Q9H7S9 590 aaPredicted RBP14.37□□□□□ -0.11
VPS39-203ENST00000561797 LRTM1Q9HBL6 345 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 C1orf109Q9NX04 203 aa14.37□□□□□ -0.11
VPS39-203ENST00000561797 KLF2Q9Y5W3 355 aaPredicted RBP14.37□□□□□ -0.11
VPS39-203ENST00000561797 A0A1B0GVC2 190 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 ANKRD33BA6NCL7 494 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 MYO1GB0I1T2 1018 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 TMEM233B4DJY2 109 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 SUSD5O60279 629 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 NPHS1O60500 1241 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 TRIM3O75382 744 aaPredicted RBP14.36□□□□□ -0.11
VPS39-203ENST00000561797 BCAS2O75934 225 aaPredicted RBP14.36□□□□□ -0.11
VPS39-203ENST00000561797 CLDN14O95500 239 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 SNRPB2P08579 225 aaKnown RBP14.36□□□□□ -0.11
VPS39-203ENST00000561797 AGAP20933 346 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 DRD5P21918 477 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 TACR1P25103 407 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 CASP3P42574 277 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 MASP1P48740 699 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 TRPC1P48995 793 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 NCBP2P52298 156 aaKnown RBP eCLIP14.36□□□□□ -0.11
VPS39-203ENST00000561797 DCAF7P61962 342 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 PLCXD2Q0VAA5 305 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 KIAA0040Q15053 153 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 CEBPEQ15744 281 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 KRT71Q3SY84 523 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 ARL13AQ5H913 290 aaPredicted RBP14.36□□□□□ -0.11
VPS39-203ENST00000561797 KANK2Q63ZY3 851 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 TMEM211Q6ICI0 200 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 ZNF585AQ6P3V2 769 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 Q6ZSR9 355 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 NUP54Q7Z3B4 507 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 PACS2Q86VP3 889 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 DDIASQ8IXT1 998 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 SLC34A3Q8N130 599 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 RPRMLQ8N4K4 120 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 OR7G2Q8NG99 324 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 OR2T11Q8NH01 316 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 PUM2Q8TB72 1066 aaKnown RBP eCLIP14.36□□□□□ -0.11
VPS39-203ENST00000561797 GFM2Q969S9 779 aaKnown RBP14.36□□□□□ -0.11
VPS39-203ENST00000561797 TMEM109Q9BVC6 243 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 ANGPTL4Q9BY76 406 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 SLC6A15Q9H2J7 730 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 TUBB1Q9H4B7 451 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 METTL7AQ9H8H3 244 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 B4GALT7Q9UBV7 327 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 ACAD8Q9UKU7 415 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 EXO1Q9UQ84 846 aaKnown RBP14.36□□□□□ -0.11
VPS39-203ENST00000561797 DNAJC15Q9Y5T4 150 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 PCNX3Q9H6A9 2034 aa14.36□□□□□ -0.11
VPS39-203ENST00000561797 C2orf72A6NCS6 295 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 OR14I1A6ND48 311 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 AQP7O14520 342 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 GNB5O14775 395 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 BCKDKO14874 412 aa14.35□□□□□ -0.11
VPS39-203ENST00000561797 ACOX3O15254 700 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 58.8 ms