RNA–Protein interactions for RNA: ENST00000557740.5

SHMT2-235, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-235ENST00000557740 KLRF1Q9NZS2 232 aa13.38□□□□□ -0.27
SHMT2-235ENST00000557740 PRODH2Q9UF12 536 aa13.38□□□□□ -0.27
SHMT2-235ENST00000557740 MCM8Q9UJA3 840 aa13.38□□□□□ -0.27
SHMT2-235ENST00000557740 ZNF225Q9UK10 706 aa13.38□□□□□ -0.27
SHMT2-235ENST00000557740 UTS2RQ9UKP6 389 aa13.38□□□□□ -0.27
SHMT2-235ENST00000557740 STK38LQ9Y2H1 464 aa13.38□□□□□ -0.27
SHMT2-235ENST00000557740 PLLPQ9Y342 182 aa13.38□□□□□ -0.27
SHMT2-235ENST00000557740 CELSR1Q9NYQ6 3014 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 HCFC1P51610 2035 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 GNG14A0A1W2PPG7 69 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 ULK1O75385 1050 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 CBX7O95931 251 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 CD1EP15812 388 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 PCSK2P16519 638 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 ATP5F1P24539 256 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-235ENST00000557740 PTPN6P29350 595 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 KIR2DL3P43628 341 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 WNT3P56703 355 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 DCAF7P61962 342 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 MRPS35P82673 323 aaKnown RBP13.37□□□□□ -0.27
SHMT2-235ENST00000557740 MGAT2Q10469 447 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 ERCC6LQ2NKX8 1250 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 TRMT12Q53H54 448 aaKnown RBP13.37□□□□□ -0.27
SHMT2-235ENST00000557740 EIPR1Q53HC9 387 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 UNC50Q53HI1 259 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 WIPI1Q5MNZ9 446 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-235ENST00000557740 ZNF678Q5SXM1 525 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 FAM219BQ5XKK7 198 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 TIGD3Q6B0B8 471 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 VASNQ6EMK4 673 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 SLC30A6Q6NXT4 461 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 FAM180BQ6P0A1 224 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 TIFABQ6ZNK6 161 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 TRMT10CQ7L0Y3 403 aaKnown RBP13.37□□□□□ -0.27
SHMT2-235ENST00000557740 NUP54Q7Z3B4 507 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 LCA5Q86VQ0 697 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 ZZZ3Q8IYH5 903 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 TMEM151AQ8N4L1 468 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 RELL2Q8NC24 303 aaPredicted RBP13.37□□□□□ -0.27
SHMT2-235ENST00000557740 NAXEQ8NCW5 288 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 TNIP2Q8NFZ5 429 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 TMEM237Q96Q45 408 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 UGT2B28Q9BY64 529 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 GIMAP4Q9NUV9 329 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 DNAJB12Q9NXW2 375 aaKnown RBP13.37□□□□□ -0.27
SHMT2-235ENST00000557740 EHD3Q9NZN3 535 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 ZNF639Q9UID6 485 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 NFU1Q9UMS0 254 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 MTORP42345 2549 aa13.37□□□□□ -0.27
SHMT2-235ENST00000557740 AKAP9Q99996 3911 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 CCDC151A5D8V7 595 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 PRAMEF25A6NGN4 478 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 FRG2CA6NGY1 282 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 SNPHO15079 494 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 PCDH7O60245 1069 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 DLX3O60479 287 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 IL3P08700 152 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 RHOXF2BP0C7M4 288 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 DRD2P14416 443 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 BMP7P18075 431 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 CEACAM8P31997 349 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-235ENST00000557740 TIMP3P35625 211 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 PPICP45877 212 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 DUSP2Q05923 314 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 ACSM2AQ08AH3 577 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 LCP2Q13094 533 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 SNTA1Q13424 505 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 SNTB1Q13884 538 aaKnown RBP13.36□□□□□ -0.27
SHMT2-235ENST00000557740 RCAN2Q14206 197 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 SPIN4Q56A73 249 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 NHSL2Q5HYW2 709 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 NSUN5P2Q63ZY6 315 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 ACSM2BQ68CK6 577 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 TMEM81Q6P7N7 255 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 YRDCQ86U90 279 aaKnown RBP13.36□□□□□ -0.27
SHMT2-235ENST00000557740 SLC22A9Q8IVM8 553 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 SAMD14Q8IZD0 417 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-235ENST00000557740 GBP7Q8N8V2 638 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-235ENST00000557740 FAM83FQ8NEG4 500 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-235ENST00000557740 METTL6Q8TCB7 284 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 ZNF675Q8TD23 568 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 HGDQ93099 445 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 ABTB1Q969K4 478 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-235ENST00000557740 EXOSC8Q96B26 276 aaKnown RBP13.36□□□□□ -0.27
SHMT2-235ENST00000557740 CTHRC1Q96CG8 243 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 CNRIP1Q96F85 164 aaPredicted RBP13.36□□□□□ -0.27
SHMT2-235ENST00000557740 TRIB1Q96RU8 372 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 NODALQ96S42 347 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 POLDIP3Q9BY77 421 aaKnown RBP13.36□□□□□ -0.27
SHMT2-235ENST00000557740 ACPTQ9BZG2 426 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 GALNT9Q9HCQ5 603 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 TMEM216Q9P0N5 145 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 SENP1Q9P0U3 644 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 HEY2Q9UBP5 337 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 MAPRE3Q9UPY8 281 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 DLGAP4Q9Y2H0 992 aa13.36□□□□□ -0.27
SHMT2-235ENST00000557740 NINQ8N4C6 2090 aa13.35□□□□□ -0.27
SHMT2-235ENST00000557740 KDM4EB2RXH2 506 aaPredicted RBP13.35□□□□□ -0.27
SHMT2-235ENST00000557740 SYT5O00445 386 aa13.35□□□□□ -0.27
SHMT2-235ENST00000557740 RIPK2O43353 540 aa13.35□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms