RNA–Protein interactions for RNA: ENST00000556096.6

VPS33B-205, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 2

Gene VPS33B, Length 1,731 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-205ENST00000556096 A0A0A6YYC8 382 aaPredicted RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 LOC100130705A0A1B0GUX0 176 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 HYKKA2RU49 373 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 I3L1I5 382 aaPredicted RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 PLOD3O60568 738 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 LDB3O75112 727 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 UGT2B11O75310 529 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 TFAP2AP05549 437 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 LINGO3P0C6S8 592 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 RNH1P13489 461 aaKnown RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 NELFEP18615 380 aaKnown RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 LIMS1P48059 325 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 MAPK10P53779 464 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 SPIBQ01892 262 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 SPEM2Q0P670 501 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 LAPTM4AQ15012 233 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 CYP27C1Q4G0S4 372 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 NKAIN2Q5VXU1 208 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 LAIR1Q6GTX8 287 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 HEPHL1Q6MZM0 1159 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 FAM111BQ6SJ93 734 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 ISLR2Q6UXK2 745 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 ASCL5Q7RTU5 278 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 THAP5Q7Z6K1 395 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 PLXDC1Q8IUK5 500 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 ZNF786Q8N393 782 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 OR6C4Q8NGE1 309 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 ADAMTS15Q8TE58 950 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 SLC35A4Q96G79 324 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 PSD2Q9BQI7 771 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 ANKRA2Q9H9E1 313 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 ACER3Q9NUN7 267 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 TUBA8Q9NY65 449 aaPredicted RBP13.78□□□□□ -0.2
VPS33B-205ENST00000556096 NCDNQ9UBB6 729 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 KCND3Q9UK17 655 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 KCNE3Q9Y6H6 103 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 PCDH15Q96QU1 1955 aa13.78□□□□□ -0.2
VPS33B-205ENST00000556096 MYOCOSA0A1B0GUC4 107 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 B4GAT1O43505 415 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 DUX1O43812 170 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 MED26O95402 600 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 SLC35E2P0CK97 266 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 ANXA8P13928 327 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 PIGAP37287 484 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 CDH12P55289 794 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 TUBA4AP68366 448 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 MICAQ29983 383 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 PRICKLE4Q2TBC4 344 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 FAM214AQ32MH5 1076 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 GPAT3Q53EU6 434 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 EXOSC6Q5RKV6 272 aaKnown RBP13.77□□□□□ -0.21
VPS33B-205ENST00000556096 ZCCHC12Q6PEW1 402 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 ATG16L2Q8NAA4 619 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 OR2I1PQ8NGU4 316 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 OTUB1Q96FW1 271 aaPredicted RBP13.77□□□□□ -0.21
VPS33B-205ENST00000556096 EQTNQ9NQ60 294 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 KRT84Q9NSB2 600 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 NLGN3Q9NZ94 848 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 KIF17Q9P2E2 1029 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 GMEB2Q9UKD1 530 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 DSPPQ9NZW4 1301 aa13.77□□□□□ -0.21
VPS33B-205ENST00000556096 TRIM64CA6NLI5 447 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 J3KTA2 159 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 CASC3O15234 703 aaKnown RBP13.76□□□□□ -0.21
VPS33B-205ENST00000556096 MITFO75030 526 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-205ENST00000556096 SEC24DO94855 1032 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-205ENST00000556096 GADD45GO95257 159 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 NT5EP21589 574 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 RYKP34925 604 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 HOXD12P35452 270 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 YAP1P46937 504 aaKnown RBP13.76□□□□□ -0.21
VPS33B-205ENST00000556096 ID2Q02363 134 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 MGAT2Q10469 447 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 KEAP1Q14145 624 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 GRM7Q14831 915 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 SF3A2Q15428 464 aaKnown RBP13.76□□□□□ -0.21
VPS33B-205ENST00000556096 LIN52Q52LA3 116 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 TRMT12Q53H54 448 aaKnown RBP13.76□□□□□ -0.21
VPS33B-205ENST00000556096 TRIM61Q5EBN2 209 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 ZNF691Q5VV52 312 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 KANSL1Q7Z3B3 1105 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 ZNF595Q8IYB9 648 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 SHISA5Q8N114 240 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 CTHRC1Q96CG8 243 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 DUSP23Q9BVJ7 150 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 PINK1Q9BXM7 581 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 GRIP2Q9C0E4 1043 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 SLC38A1Q9H2H9 487 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 MAT2BQ9NZL9 334 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 NDUFA13Q9P0J0 144 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 MRPS33Q9Y291 106 aaKnown RBP13.76□□□□□ -0.21
VPS33B-205ENST00000556096 MN1Q10571 1320 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-205ENST00000556096 ZFHX2Q9C0A1 2572 aaPredicted RBP13.76□□□□□ -0.21
VPS33B-205ENST00000556096 A0A087WXM4 84 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 A0A1B0GTQ1 180 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 ARRDC5A6NEK1 342 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 E9PQ18 207 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 H0YIG0 161 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 CTNSO60931 367 aa13.76□□□□□ -0.21
VPS33B-205ENST00000556096 LGI1O95970 557 aa13.76□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms