RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 THOC6Q86W42 341 aaKnown RBP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 CHCHD4Q8N4Q1 142 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 HORMAD2Q8N7B1 307 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF485Q8NCK3 441 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 GALNT6Q8NCL4 622 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 OR52N2Q8NGI0 321 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF461Q8TAF7 563 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 TMEM163Q8TC26 289 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 POP5Q969H6 163 aaKnown RBP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 FBXW5Q969U6 566 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 MARC2Q969Z3 335 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 SORCS2Q96PQ0 1159 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ABHD1Q96SE0 405 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 HTATIP2Q9BUP3 242 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 GHITMQ9H3K2 345 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 ZSCAN32Q9NX65 697 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 NDOR1Q9UHB4 597 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 CLEC4AQ9UMR7 237 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 SIRT4Q9Y6E7 314 aaPredicted RBP4.59□□□□□ -1.68
LIMA1-214ENST00000552783 WDFY3Q8IZQ1 3526 aa4.59□□□□□ -1.68
LIMA1-214ENST00000552783 A0A0B4J203 849 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GFYI3L273 518 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CCL16O15467 120 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ORC5O43913 435 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PDE9AO76083 593 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 IFNW1P05000 195 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 EIF4EP06730 217 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 EPHX1P07099 455 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ANKRD34CP0C6C1 535 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CTSOP43234 321 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GSTM5P46439 218 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SLC6A11P48066 632 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 WNT4P56705 351 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 WDR5P61964 334 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 EFNB1P98172 346 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF155Q12901 538 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 MRPL28Q13084 256 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GINS1Q14691 196 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 TUSC1Q2TAM9 212 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CLEC12AQ5QGZ9 265 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GPR139Q6DWJ6 353 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PODNL1Q6PEZ8 512 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CASP12Q6UXS9 341 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 Q6ZVL8 140 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CHMP1BQ7LBR1 199 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 KRT74Q7RTS7 529 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 COMMD6Q7Z4G1 85 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 TMPRSS11BQ86T26 416 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CDH24Q86UP0 819 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF687Q8N1G0 1237 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 VPS37AQ8NEZ2 397 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 BBS1Q8NFJ9 593 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 OR8D4Q8NGM9 314 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 OR8J1Q8NGP2 316 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CYB5D2Q8WUJ1 264 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 NEIL2Q969S2 332 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ART5Q96L15 291 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 FOPNLQ96NB1 174 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ZNF558Q96NG5 402 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 DMRTA2Q96SC8 542 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 HDHD2Q9H0R4 259 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ABCG5Q9H222 651 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CXorf36Q9H7Y0 433 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ISG20L2Q9H9L3 353 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ZDHHC4Q9NPG8 344 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 MARCH5Q9NX47 278 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 KCTD5Q9NXV2 234 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SLC25A13Q9UJS0 675 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 FBXO9Q9UK97 447 aaPredicted RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 FBXW2Q9UKT8 454 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 DIMT1Q9UNQ2 313 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 RUVBL1Q9Y265 456 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 NCKAP1Q9Y2A7 1128 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 RPL36Q9Y3U8 105 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 PCDHGB7Q9Y5F8 929 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 OR51B4Q9Y5P0 310 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 REV3LO60673 3130 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 EYSQ5T1H1 3165 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ZC3H12DA2A288 527 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 POM121CA8CG34 1229 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 LGALS8O00214 317 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 RNASET2O00584 256 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GABRPO00591 440 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SCAMP1O15126 338 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 EEF1E1O43324 174 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SGTAO43765 313 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 HCN1O60741 890 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 EPPINO95925 133 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 TPOP07202 933 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CD70P32970 193 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ETV3P41162 512 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SELENOPP49908 381 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 TAS2R50P59544 299 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 ZP1P60852 638 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 AP1S1P61966 158 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 CAMK2DQ13557 499 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 C1DQ13901 141 aaKnown RBP4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GALEQ14376 348 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 GRM7Q14831 915 aa4.58□□□□□ -1.68
LIMA1-214ENST00000552783 SUZ12Q15022 739 aaKnown RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms