RNA–Protein interactions for RNA: ENST00000551691.5

LIMA1-208, Transcript of LIM domain and actin binding 1, humanhuman

TSL 3

Gene LIMA1, Length 583 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-208ENST00000551691 PRSS22Q9GZN4 317 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 PLAC1Q9HBJ0 212 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 GSN-AS1Q9NRJ2 163 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 OLFML3Q9NRN5 406 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 SERINC1Q9NRX5 453 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 ZCCHC3Q9NUD5 404 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 TRMT6Q9UJA5 497 aaKnown RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 TSPAN16Q9UKR8 245 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 NAP1L2Q9ULW6 460 aaPredicted RBP3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CLCA3PQ9Y6N3 262 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 MYH10P35580 1976 aa3.47□□□□□ -1.85
LIMA1-208ENST00000551691 CITO14578 2027 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 TRAV24A0A0B4J272 114 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 A0A1W2PRB8 838 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 EME2A4GXA9 379 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 CFAP73A6NFT4 308 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 C10orf142B7Z368 130 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 TMEM150CB9EJG8 249 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 E5RJQ4 531 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 NTN3O00634 580 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 LRRTM2O43300 516 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SPRY3O43610 288 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 KCNJ13O60928 360 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 AKR7A3O95154 331 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 LYPLA2O95372 231 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 TPM2P07951 284 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 CYP3A5P20815 502 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 KELP23276 732 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SSTR1P30872 391 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 CHRNA3P32297 505 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 PTGER4P35408 488 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 USP8P40818 1118 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 NAMPTP43490 491 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 AMTP48728 403 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 NUMBP49757 651 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 NR0B1P51843 470 aaKnown RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 MTTPP55157 894 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 EEF1A1P68104 462 aaKnown RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 ROR2Q01974 943 aaKnown RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 KLC1Q07866 573 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 IL10RBQ08334 325 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 CETN1Q12798 172 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 C1orf61Q13536 156 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 GAMTQ14353 236 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 HNF4GQ14541 408 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 DAZAP2Q15038 168 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SRSF7Q16629 238 aaKnown RBP eCLIP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 ODF4Q2M2E3 257 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 ANKDD1AQ495B1 522 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 FASTKD1Q53R41 847 aaKnown RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 C10orf25Q5T742 122 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 PXDC1Q5TGL8 231 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 EEF1A1P5Q5VTE0 462 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 KCTD11Q693B1 232 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 RAET1GQ6H3X3 334 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 UNC5DQ6UXZ4 953 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 PACS1Q6VY07 963 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 MACC1Q6ZN28 852 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 TAF8Q7Z7C8 310 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 CATSPER3Q86XQ3 398 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SPATA2LQ8IUW3 424 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 MMAAQ8IVH4 418 aaKnown RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 LGI2Q8N0V4 545 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 PDCL2Q8N4E4 241 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 Q8N9G6 341 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 OR5R1Q8NH85 324 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 RNF128Q8TEB7 428 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 NDRG1Q92597 394 aaKnown RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 DPF1Q92782 380 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 N4BP2L2Q92802 583 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 DHX58Q96C10 678 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 TRIM44Q96DX7 344 aaPredicted RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SPATA13Q96N96 652 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 NEURL2Q9BR09 285 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 ZNF559Q9BR84 538 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 BTBD10Q9BSF8 475 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SLC2A11Q9BYW1 496 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 RAB17Q9H0T7 212 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 P2RY12Q9H244 342 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 HSD3B7Q9H2F3 369 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 LIN28AQ9H9Z2 209 aaKnown RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 PCDH9Q9HC56 1237 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SPHK1Q9NYA1 384 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 NLGN3Q9NZ94 848 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 B3GAT1Q9P2W7 334 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SPASTQ9UBP0 616 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 UBQLN2Q9UHD9 624 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SLC12A6Q9UHW9 1150 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 UBQLN1Q9UMX0 589 aaKnown RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 KCNJ14Q9UNX9 436 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 PLA2G4CQ9UP65 541 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 VDAC3Q9Y277 283 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 NCKAP1Q9Y2A7 1128 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 HBS1LQ9Y450 684 aaKnown RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 MRPS18BQ9Y676 258 aaKnown RBP3.46□□□□□ -1.86
LIMA1-208ENST00000551691 MXRA5Q9NR99 2828 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 NBEAL2Q6ZNJ1 2754 aa3.46□□□□□ -1.86
LIMA1-208ENST00000551691 SCN8AQ9UQD0 1980 aa3.45□□□□□ -1.86
LIMA1-208ENST00000551691 ANK3Q12955 4377 aaKnown RBP3.45□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms