RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 GABRA1P14867 456 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 SOX18P35713 384 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 ADH7P40394 386 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 SLCO1A2P46721 670 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 ZFP36L2P47974 494 aaKnown RBP14.96□□□□□ -0.01
VPS29-207ENST00000549970 TLE4Q04727 773 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 BTKQ06187 659 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 ACSM2AQ08AH3 577 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 SPIN4Q56A73 249 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 ACSM2BQ68CK6 577 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 DESI1Q6ICB0 168 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 CCDC116Q8IYX3 515 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 UBLCP1Q8WVY7 318 aaPredicted RBP14.96□□□□□ -0.01
VPS29-207ENST00000549970 CTHRC1Q96CG8 243 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 OMA1Q96E52 524 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 C14orf79Q96F83 325 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 LCORQ96JN0 433 aaPredicted RBP14.96□□□□□ -0.01
VPS29-207ENST00000549970 GNRHR2Q96P88 292 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 EBPLQ9BY08 206 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 ANGPTL4Q9BY76 406 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 MID1IP1Q9NPA3 183 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 EHD3Q9NZN3 535 aa14.96□□□□□ -0.01
VPS29-207ENST00000549970 CCDC151A5D8V7 595 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 SMIM23A6NLE4 172 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 G3V2L1 256 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 GNB5O14775 395 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 IGFBP2P18065 325 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 ELAVL4P26378 380 aaKnown RBP14.95□□□□□ -0.02
VPS29-207ENST00000549970 MSX1P28360 303 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 TIA1P31483 386 aaKnown RBP eCLIP14.95□□□□□ -0.02
VPS29-207ENST00000549970 FOXA1P55317 472 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 KRTAP10-9P60411 292 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 PLCXD2Q0VAA5 305 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 TOMM20Q15388 145 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 FNDC7Q5VTL7 733 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 ZYG11AQ6WRX3 759 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 ULK2Q8IYT8 1036 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 OR9A2Q8NGT5 310 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 CDC26Q8NHZ8 85 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 C16orf78Q8WTQ4 265 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 CCDC126Q96EE4 140 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 HSPBAP1Q96EW2 488 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 TREX2Q9BQ50 279 aaPredicted RBP14.95□□□□□ -0.02
VPS29-207ENST00000549970 UBQLN3Q9H347 655 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 METTL7AQ9H8H3 244 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 ANKRA2Q9H9E1 313 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 PRODH2Q9UF12 536 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 C15orf41Q9Y2V0 281 aa14.95□□□□□ -0.02
VPS29-207ENST00000549970 ARHGAP21Q5T5U3 1957 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 OTOGQ6ZRI0 2925 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 UBFD1O14562 309 aaKnown RBP14.94□□□□□ -0.02
VPS29-207ENST00000549970 HOXD4P09016 255 aaPredicted RBP14.94□□□□□ -0.02
VPS29-207ENST00000549970 DRD2P14416 443 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 NAGAP17050 411 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 EMDP50402 254 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 CDK9P50750 372 aaKnown RBP14.94□□□□□ -0.02
VPS29-207ENST00000549970 HEPACAMQ14CZ8 416 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 ZNF628Q5EBL2 1059 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 SPDYAQ5MJ70 313 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 CNPY4Q8N129 248 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 ZNF675Q8TD23 568 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 KAT2AQ92830 837 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 HGDQ93099 445 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 TMEM41AQ96HV5 264 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 NODALQ96S42 347 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 OSBPL11Q9BXB4 747 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 GIMAP4Q9NUV9 329 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 SLC6A5Q9Y345 797 aa14.94□□□□□ -0.02
VPS29-207ENST00000549970 C2orf72A6NCS6 295 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 FRG2CA6NGY1 282 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 ACOX3O15254 700 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 UGT2B11O75310 529 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 NME6O75414 186 aaPredicted RBP14.93□□□□□ -0.02
VPS29-207ENST00000549970 CRCPO75575 148 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 PROCP04070 461 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 HPNP05981 417 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 ANXA4P09525 319 aaPredicted RBP14.93□□□□□ -0.02
VPS29-207ENST00000549970 PPICP45877 212 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 NAGLUP54802 743 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 DCAF7P61962 342 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 CRYZQ08257 329 aaKnown RBP14.93□□□□□ -0.02
VPS29-207ENST00000549970 IMPG1Q17R60 797 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 CFAP157Q5JU67 520 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 RIPPLY2Q5TAB7 128 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 GALNT18Q6P9A2 607 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 ANGPTL8Q6UXH0 198 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 SH2D5Q6ZV89 423 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 NUP54Q7Z3B4 507 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 WDR53Q7Z5U6 358 aaPredicted RBP14.93□□□□□ -0.02
VPS29-207ENST00000549970 LIX1LQ8IVB5 337 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 DMRTC2Q8IXT2 367 aaPredicted RBP14.93□□□□□ -0.02
VPS29-207ENST00000549970 CCDC63Q8NA47 563 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 OR1J4Q8NGS1 313 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 C12orf65Q9H3J6 166 aaKnown RBP14.93□□□□□ -0.02
VPS29-207ENST00000549970 GALNT9Q9HCQ5 603 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 SLC35C2Q9NQQ7 365 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 KLRF1Q9NZS2 232 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 SENP1Q9P0U3 644 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 PCDHGB3Q9Y5G1 929 aa14.93□□□□□ -0.02
VPS29-207ENST00000549970 POLQO75417 2590 aa14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms