RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 DAPP1Q9UN19 280 aa8.22□□□□□ -1.09
USP28-205ENST00000537706 CRYL1Q9Y2S2 319 aa8.22□□□□□ -1.09
USP28-205ENST00000537706 PMF1-BGLAPU3KQ54 211 aa8.22□□□□□ -1.09
USP28-205ENST00000537706 A0A0G2JN53 185 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 C2orf92A0A1B0GVN3 265 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 CYR61O00622 381 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 LDB3O75112 727 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 METTL18O95568 372 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 IGKV3-11P04433 115 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 GSTM2P28161 218 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 SRD5A2P31213 254 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 CHRNB3Q05901 458 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 SP140Q13342 867 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 DOC2AQ14183 400 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 OCLNQ16625 522 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 PCID2Q5JVF3 399 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 EMBQ6PCB8 327 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 RINLQ6ZS11 566 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 KLHDC8AQ8IYD2 350 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 UBQLNLQ8IYU4 475 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 FIG4Q92562 907 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 GFM2Q969S9 779 aaKnown RBP8.21□□□□□ -1.09
USP28-205ENST00000537706 RADILQ96JH8 1075 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 ZNF778Q96MU6 729 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 CSF3RQ99062 836 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 RNF122Q9H9V4 155 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 MYOZ1Q9NP98 299 aaPredicted RBP8.21□□□□□ -1.09
USP28-205ENST00000537706 KLRF1Q9NZS2 232 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 DMGDHQ9UI17 866 aaKnown RBP8.21□□□□□ -1.09
USP28-205ENST00000537706 EXO1Q9UQ84 846 aaKnown RBP8.21□□□□□ -1.09
USP28-205ENST00000537706 PTGDR2Q9Y5Y4 395 aa8.21□□□□□ -1.09
USP28-205ENST00000537706 H7C417 338 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 SMAD9O15198 467 aaKnown RBP8.21□□□□□ -1.1
USP28-205ENST00000537706 ZNF23P17027 643 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 ADH6P28332 368 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 HILS1P60008 231 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 RPS13P62277 151 aaKnown RBP8.21□□□□□ -1.1
USP28-205ENST00000537706 BSPH1Q075Z2 132 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 CARTPTQ16568 116 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 SSX8Q7RTT4 187 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 EXOC3L1Q86VI1 746 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 CCDC25Q86WR0 208 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 EIF1ADQ8N9N8 165 aaKnown RBP8.21□□□□□ -1.1
USP28-205ENST00000537706 LINC01356Q8N9X3 169 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 KRT35Q92764 455 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 NAP1L3Q99457 506 aaPredicted RBP8.21□□□□□ -1.1
USP28-205ENST00000537706 PKP2Q99959 881 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 PINK1Q9BXM7 581 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 TRIM54Q9BYV2 358 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 PARVBQ9HBI1 364 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 LYRM4Q9HD34 91 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 PRM3Q9NNZ6 103 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 MED4Q9NPJ6 270 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 POU2F3Q9UKI9 436 aa8.21□□□□□ -1.1
USP28-205ENST00000537706 NOTCH1P46531 2555 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 H3BQF6 201 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 OGNP20774 298 aaKnown RBP8.2□□□□□ -1.1
USP28-205ENST00000537706 RGS4P49798 205 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 CLCN7P51798 805 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 PLA2G16P53816 162 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 C21orf58P58505 322 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 HERVK_113P63132 956 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 ERVK-8P63133 956 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 ID2Q02363 134 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 SNTA1Q13424 505 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 CUL1Q13616 776 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 EBPQ15125 230 aaKnown RBP8.2□□□□□ -1.1
USP28-205ENST00000537706 SGCBQ16585 318 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 CTU2Q2VPK5 515 aaKnown RBP8.2□□□□□ -1.1
USP28-205ENST00000537706 TMEM81Q6P7N7 255 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 IFT20Q8IY31 132 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 GSPT2Q8IYD1 628 aaKnown RBP8.2□□□□□ -1.1
USP28-205ENST00000537706 UBL4BQ8N7F7 174 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 GBP7Q8N8V2 638 aaPredicted RBP8.2□□□□□ -1.1
USP28-205ENST00000537706 FAM71DQ8N9W8 422 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP8.2□□□□□ -1.1
USP28-205ENST00000537706 S100PBPQ96BU1 408 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 DHRS9Q9BPW9 319 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 ERVK-6Q9BXR3 956 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 GALPQ9UBC7 116 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 ERVK-19Q9WJR5 959 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 PDE10AQ9Y233 779 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 DTX4Q9Y2E6 619 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 EFR3BQ9Y2G0 817 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 NCKAP5O14513 1909 aa8.2□□□□□ -1.1
USP28-205ENST00000537706 PKD1L1Q8TDX9 2849 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 VWC2LB2RUY7 222 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 PTNP21246 168 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 TTKP33981 857 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 FDFT1P37268 417 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 HNRNPH2P55795 449 aaKnown RBP8.19□□□□□ -1.1
USP28-205ENST00000537706 SLC7A5Q01650 507 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 CTBP1Q13363 440 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 ZNF267Q14586 743 aaPredicted RBP8.19□□□□□ -1.1
USP28-205ENST00000537706 PON3Q15166 354 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 PPP4R4Q6NUP7 873 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 TMEM64Q6YI46 380 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 CYHR1Q6ZMK1 362 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 TMPRSS11BQ86T26 416 aa8.19□□□□□ -1.1
USP28-205ENST00000537706 ANKRD53Q8N9V6 530 aa8.19□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms