RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 CLDN18P56856 261 aa18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 SIRPAP78324 504 aa18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 NUP54Q7Z3B4 507 aa18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 MYLK4Q86YV6 388 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 IGFBPL1Q8WX77 278 aa18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 OMA1Q96E52 524 aa18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 NAP1L3Q99457 506 aaPredicted RBP18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 WDR41Q9HAD4 459 aa18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 LYARQ9NX58 379 aaKnown RBP18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 HEY2Q9UBP5 337 aa18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 USF3Q68DE3 2245 aa18.39■□□□□ 0.53
SQSTM1-215ENST00000514093 RNF223E7ERA6 249 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 NT5EP21589 574 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 PIK3R1P27986 724 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 ATP5J2P56134 94 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 POU4F1Q01851 419 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 DMTNQ08495 405 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 FRG1Q14331 258 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 C10orf62Q5T681 223 aaPredicted RBP18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 GRHL2Q6ISB3 625 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 SCIMPQ6UWF3 145 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 MEIOBQ8N635 442 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 TMEM171Q8WVE6 324 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 MCMBPQ9BTE3 642 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 DDX47Q9H0S4 455 aaKnown RBP18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 SMYD2Q9NRG4 433 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 MOCS1Q9NZB8 636 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 FBXL2Q9UKC9 423 aa18.38■□□□□ 0.53
SQSTM1-215ENST00000514093 ROS1P08922 2347 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 A0A087X1B8 175 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 C16orf97H3BN30 126 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 HCRTR2O43614 444 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 UGT2B11O75310 529 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 RHOXF2BP0C7M4 288 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 ZNF708P17019 499 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 S1PR1P21453 382 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 CDC25BP30305 580 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 KIR2DL2P43627 348 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 ATP6V0D1P61421 351 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 FASTKD3Q14CZ7 662 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 OR52E8Q6IFG1 317 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 HEPHL1Q6MZM0 1159 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 FBXO36Q8NEA4 188 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 C17orf47Q8NEP4 570 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 SFXN2Q96NB2 322 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 ITPAQ9BY32 194 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 DDX31Q9H8H2 851 aaKnown RBP18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 ZNF701Q9NV72 531 aaPredicted RBP18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 OPTCQ9UBM4 332 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 ADGRE2Q9UHX3 823 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 DLGAP4Q9Y2H0 992 aa18.37■□□□□ 0.53
SQSTM1-215ENST00000514093 K7EPI3 171 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 PLAUP00749 431 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 PAX1P15863 534 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 NAGAP17050 411 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 PTX3P26022 381 aaPredicted RBP18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 PIK3CBP42338 1070 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 XKP51811 444 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 EXOSC7Q15024 291 aaKnown RBP18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 OR5M10Q6IEU7 315 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 TMEM81Q6P7N7 255 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 AAGABQ6PD74 315 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 PODNL1Q6PEZ8 512 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 FAM111BQ6SJ93 734 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 UBQLNLQ8IYU4 475 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 ZNF610Q8N9Z0 462 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 FIG4Q92562 907 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 LRRC39Q96DD0 335 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 SLC39A3Q9BRY0 314 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 KLHL4Q9C0H6 718 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 ALG9Q9H6U8 611 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 ELOVL5Q9NYP7 299 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 BCAP29Q9UHQ4 241 aa18.36■□□□□ 0.53
SQSTM1-215ENST00000514093 GOLGA6L10A0A0M3HER8 536 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 PRAMEF25A6NGN4 478 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 SLC22A20A6NK97 555 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 UBXN8O00124 270 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 CRHP06850 196 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 SRD5A2P31213 254 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 PCYT1AP49585 367 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 PLCXD2Q0VAA5 305 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 SNTA1Q13424 505 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 MORF4L2Q15014 288 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 OR2A2Q6IF42 318 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 CHMP1BQ7LBR1 199 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 PLCZ1Q86YW0 608 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 TEX9Q8N6V9 391 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 OR7G1Q8NGA0 311 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 OR4K14Q8NGD5 310 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 TSPAN17Q96FV3 270 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 ZNF845Q96IR2 970 aaPredicted RBP18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 BRINP2Q9C0B6 783 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 CXorf56Q9H5V9 222 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 JRKLQ9Y4A0 524 aa18.35■□□□□ 0.53
SQSTM1-215ENST00000514093 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 LRRC14BA6NHZ5 514 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 CXorf49A8MYA2 514 aaPredicted RBP18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 SUPT3HB4E1H0 165 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 SUPT3HO75486 399 aa18.34■□□□□ 0.53
SQSTM1-215ENST00000514093 SOX30O94993 753 aa18.34■□□□□ 0.53
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms