RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 KLF8O95600 359 aaPredicted RBP11.27□□□□□ -0.6
NUP54-202ENST00000502850 HNRNPCP07910 306 aaKnown RBP eCLIP11.27□□□□□ -0.6
NUP54-202ENST00000502850 HNRNPA2B1P22626 353 aaKnown RBP11.27□□□□□ -0.6
NUP54-202ENST00000502850 GADD45AP24522 165 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 ALDH4A1P30038 563 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 MAT2AP31153 395 aaKnown RBP11.27□□□□□ -0.6
NUP54-202ENST00000502850 TLX1P31314 330 aaPredicted RBP11.27□□□□□ -0.6
NUP54-202ENST00000502850 PRKAR1BP31321 381 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 CTHP32929 405 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 S100A5P33763 92 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 RGS6P49758 472 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 PRKAG1P54619 331 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 YPEL5P62699 121 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 TNFRSF17Q02223 184 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 C1DQ13901 141 aaKnown RBP11.27□□□□□ -0.6
NUP54-202ENST00000502850 NCF4Q15080 339 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 SEC23BQ15437 767 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 INAQ16352 499 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 TMEM44Q2T9K0 475 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 ENPP7Q6UWV6 458 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 TMEM107Q6UX40 140 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 MFSD4AQ8N468 514 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 NUP43Q8NFH3 380 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 OR9Q1Q8NGQ5 310 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 WDR36Q8NI36 951 aaKnown RBP11.27□□□□□ -0.6
NUP54-202ENST00000502850 SLC7A13Q8TCU3 470 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 TMEM80Q96HE8 168 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 MS4A4EQ96PG1 132 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 SERINC2Q96SA4 455 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 MND1Q9BWT6 205 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 TEX12Q9BXU0 123 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 POLDIP3Q9BY77 421 aaKnown RBP11.27□□□□□ -0.6
NUP54-202ENST00000502850 ACTRT3Q9BYD9 372 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 MROQ9BYG7 248 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 DSN1Q9H410 356 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 AMBNQ9NP70 447 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 RHBDL2Q9NX52 303 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 SPHK1Q9NYA1 384 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 SELENONQ9NZV5 590 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 SNX11Q9Y5W9 270 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 SPACA6W5XKT8 324 aa11.27□□□□□ -0.6
NUP54-202ENST00000502850 PRAMEF27A3QJZ7 478 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 ISPDA4D126 451 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 FAM221BA6H8Z2 402 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 METTL15A6NJ78 407 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 M0R3H8 397 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 PTHP01270 115 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 CHRM4P08173 479 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 IFI6P09912 130 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 CD72P21854 359 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 SMSP52788 366 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 PPP2CBP62714 309 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 PPP2CAP67775 309 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 RELAQ04206 551 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 ATP1A4Q13733 1029 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 TRAM2Q15035 370 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 GPR19Q15760 415 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 MFSD4BQ5TF39 518 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 C1orf94Q6P1W5 598 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 PODNL1Q6PEZ8 512 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 ABHD13Q7L211 337 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 C16orf62Q7Z3J2 963 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 ZBTB46Q86UZ6 589 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 CCDC116Q8IYX3 515 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 LRRC25Q8N386 305 aaPredicted RBP11.27□□□□□ -0.61
NUP54-202ENST00000502850 ZNF655Q8N720 491 aaPredicted RBP11.27□□□□□ -0.61
NUP54-202ENST00000502850 CAMKVQ8NCB2 501 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 SMRP1Q8NCR6 262 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 OR4K5Q8NGD3 323 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 GNPDA2Q8TDQ7 276 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 ELP4Q96EB1 424 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 OTUB1Q96FW1 271 aaPredicted RBP11.27□□□□□ -0.61
NUP54-202ENST00000502850 OR7D2Q96RA2 312 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 MGLLQ99685 303 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 ARHGDIGQ99819 225 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 C8orf33Q9H7E9 229 aaPredicted RBP11.27□□□□□ -0.61
NUP54-202ENST00000502850 SIAEQ9HAT2 523 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 KRCC1Q9NPI7 259 aaPredicted RBP11.27□□□□□ -0.61
NUP54-202ENST00000502850 TRNAU1APQ9NX07 287 aaKnown RBP11.27□□□□□ -0.61
NUP54-202ENST00000502850 NTMQ9P121 344 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 TBC1D29Q9UFV1 150 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 APOBEC3BQ9UH17 382 aaKnown RBP11.27□□□□□ -0.61
NUP54-202ENST00000502850 DAPK2Q9UIK4 370 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 IFT52Q9Y366 437 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 PCDHGA3Q9Y5H0 932 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 DOCK9Q9BZ29 2069 aa11.27□□□□□ -0.61
NUP54-202ENST00000502850 MDC1Q14676 2089 aaKnown RBP11.26□□□□□ -0.61
NUP54-202ENST00000502850 PNMA8CA0A1B0GUJ8 204 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 GLOD5A6NK44 160 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 C4orf51C9J302 202 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 PGRMC2O15173 223 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 PPM1DO15297 605 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 TNFSF14O43557 240 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 B3GALT2O43825 422 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 ADAM23O75077 832 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 ENTPD6O75354 484 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 AKT2P31751 481 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 ACTR1BP42025 376 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 PPP5CP53041 499 aa11.26□□□□□ -0.61
NUP54-202ENST00000502850 TAS2R41P59536 307 aa11.26□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms