RNA–Protein interactions for RNA: ENST00000496458.1

SF3B1-212, Transcript of splicing factor 3b subunit 1, human

TSL 2

Gene SF3B1, Length 475 nt, Biotype retained intron, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B1-212	ENST00000496458		A0A1W2PNU3	283 aa	Predicted RBP	4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	BCLAF3	A2AJT9	711 aa	Known RBP	4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZSCAN5C	A6NGD5	496 aa	Predicted RBP	4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	ANGPT2	O15123	496 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	CLN5	O75503	358 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	AKAP3	O75969	853 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	LYN	P07948	512 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	HSPA5	P11021	654 aa	Known RBP	4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	CCNC	P24863	283 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	ASMT	P46597	345 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	HSPA2	P54652	639 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	NME5	P56597	212 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	ST8SIA6	P61647	398 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	TRA2B	P62995	288 aa	Known RBP	4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	GBE1	Q04446	702 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	GAMT	Q14353	236 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	SGCB	Q16585	318 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	CCL14	Q16627	93 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	LYPLAL1	Q5VWZ2	237 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	RBM43	Q6ZSC3	357 aa	Known RBP	4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	ELMOD2	Q8IZ81	293 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	CLYBL	Q8N0X4	340 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	UXS1	Q8NBZ7	420 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	NEK11	Q8NG66	645 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	OR6T1	Q8NGN1	323 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	C8orf46	Q8TAG6	207 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	URGCP	Q8TCY9	931 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	RNF139	Q8WU17	664 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	RAB7B	Q96AH8	199 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	DTNBP1	Q96EV8	351 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	HSD17B14	Q9BPX1	270 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	KRTAP4-4	Q9BYR3	166 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	VIPAS39	Q9H9C1	493 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	PRMT8	Q9NR22	394 aa	Predicted RBP	4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	DNAJC17	Q9NVM6	304 aa	Known RBP	4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	AIPL1	Q9NZN9	384 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	TRPC4	Q9UBN4	977 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	STX8	Q9UNK0	236 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	CAB39	Q9Y376	341 aa	Predicted RBP	4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	ETV7	Q9Y603	341 aa		4.23	□□□□□ -1.73
SF3B1-212	ENST00000496458	C3	P01024	1663 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	ANKRD50	Q9ULJ7	1429 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	OR5H15	A6NDH6	313 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	SRRM4	A7MD48	611 aa	Known RBP	4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458		H0YC42	278 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	SGK1	O00141	431 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	RASGRF2	O14827	1237 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	BBOX1	O75936	387 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	TPBGL	P0DKB5	382 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	ETS1	P14921	441 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	TMOD1	P28289	359 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	CCND3	P30281	292 aa	Predicted RBP	4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	MDH1	P40925	334 aa	Known RBP	4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	GBX2	P52951	348 aa	Predicted RBP	4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	PRKCE	Q02156	737 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	DPYS	Q14117	519 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	BOLA3	Q53S33	107 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZNF789	Q5FWF6	425 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	VWA2	Q5GFL6	755 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	ARMCX5	Q6P1M9	558 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	NHLRC1	Q6VVB1	395 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZNF781	Q8N8C0	355 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZNRF1	Q8ND25	227 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	MRAP	Q8TCY5	172 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	CKAP2	Q8WWK9	683 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	TMEM186	Q96B77	213 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	TUBGCP3	Q96CW5	907 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	C5orf30	Q96GV9	206 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	RWDD1	Q9H446	243 aa	Predicted RBP	4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	SYTL2	Q9HCH5	934 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	TUFT1	Q9NNX1	390 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	GPR173	Q9NS66	373 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	CUTC	Q9NTM9	273 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	DHRS4-AS1	Q9P1J3	65 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZNF319	Q9P2F9	582 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	SPAST	Q9UBP0	616 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	FAM153A	Q9UHL3	310 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	PTBP2	Q9UKA9	531 aa	Known RBP	4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	FBXW2	Q9UKT8	454 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	GPR132	Q9UNW8	380 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	TDRKH	Q9Y2W6	561 aa	Known RBP	4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	TMED5	Q9Y3A6	229 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	FBXO7	Q9Y3I1	522 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	TEX264	Q9Y6I9	313 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	NSD2	O96028	1365 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	ROCK1	Q13464	1354 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	KANK1	Q14678	1352 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	NINL	Q9Y2I6	1382 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	ADGRL2	O95490	1459 aa		4.22	□□□□□ -1.73
SF3B1-212	ENST00000496458	ERBIN	Q96RT1	1412 aa		4.21	□□□□□ -1.73
SF3B1-212	ENST00000496458	CEP152	O94986	1710 aa		4.21	□□□□□ -1.73
SF3B1-212	ENST00000496458	ZNF724	A8MTY0	619 aa		4.21	□□□□□ -1.74
SF3B1-212	ENST00000496458		H0YCG3	227 aa		4.21	□□□□□ -1.74
SF3B1-212	ENST00000496458	ZNF253	O75346	499 aa		4.21	□□□□□ -1.74
SF3B1-212	ENST00000496458	FRAT2	O75474	233 aa	Predicted RBP	4.21	□□□□□ -1.74
SF3B1-212	ENST00000496458	ADCY5	O95622	1261 aa		4.21	□□□□□ -1.74
SF3B1-212	ENST00000496458	PRG2	P13727	222 aa		4.21	□□□□□ -1.74
SF3B1-212	ENST00000496458	VCL	P18206	1134 aa		4.21	□□□□□ -1.74
SF3B1-212	ENST00000496458	AHCY	P23526	432 aa		4.21	□□□□□ -1.74
SF3B1-212	ENST00000496458	GJB2	P29033	226 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms