RNA–Protein interactions for RNA: ENST00000474047.5

VAMP4-203, Transcript of vesicle associated membrane protein 4, humanhuman

TSL 1 (best)

Gene VAMP4, Length 1,738 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-203ENST00000474047 ZFP28Q8NHY6 868 aa13.1□□□□□ -0.31
VAMP4-203ENST00000474047 PAQR8Q8TEZ7 354 aa13.1□□□□□ -0.31
VAMP4-203ENST00000474047 HSPBAP1Q96EW2 488 aa13.1□□□□□ -0.31
VAMP4-203ENST00000474047 PPP1R36Q96LQ0 422 aa13.1□□□□□ -0.31
VAMP4-203ENST00000474047 C1orf50Q9BV19 199 aa13.1□□□□□ -0.31
VAMP4-203ENST00000474047 DEFB127Q9H1M4 99 aa13.1□□□□□ -0.31
VAMP4-203ENST00000474047 ZNF395Q9H8N7 513 aaPredicted RBP13.1□□□□□ -0.31
VAMP4-203ENST00000474047 ANKRA2Q9H9E1 313 aa13.1□□□□□ -0.31
VAMP4-203ENST00000474047 GIMAP2Q9UG22 337 aa13.1□□□□□ -0.31
VAMP4-203ENST00000474047 BOKQ9UMX3 212 aaPredicted RBP13.1□□□□□ -0.31
VAMP4-203ENST00000474047 EIF3LQ9Y262 564 aaKnown RBP13.1□□□□□ -0.31
VAMP4-203ENST00000474047 DTX4Q9Y2E6 619 aa13.1□□□□□ -0.31
VAMP4-203ENST00000474047 SEC23IPQ9Y6Y8 1000 aaKnown RBP13.1□□□□□ -0.31
VAMP4-203ENST00000474047 A0A0G2JMM0 328 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 A0A1W2PPB8 328 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 A0A1W2PRS3 328 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 KIR3DP1A8MWS1 328 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 ACOX3O15254 700 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 SLC19A2O60779 497 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 COQ9O75208 318 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 WISP2O76076 250 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 PDE9AO76083 593 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 SLITRK5O94991 958 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 BCKDHAP12694 445 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 DRD5P21918 477 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 KRT20P35900 424 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 HPCAL1P37235 193 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 PPICP45877 212 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 EMDP50402 254 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 PLCXD2Q0VAA5 305 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 MAD2L1Q13257 205 aaPredicted RBP13.09□□□□□ -0.31
VAMP4-203ENST00000474047 RPS6KA2Q15349 733 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 CEBPEQ15744 281 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 NTRK2Q16620 822 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 XKR7Q5GH72 579 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 ANKRD26P1Q6NSI1 321 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 TMEM107Q6UX40 140 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 SIAH3Q8IW03 269 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 FBXW8Q8N3Y1 598 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 LIX1Q8N485 282 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 GOLGA6L1Q8N7Z2 621 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 ZNF781Q8N8C0 355 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 SIMC1Q8NDZ2 872 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 FCRL1Q96LA6 429 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 C3orf30Q96M34 536 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 TTTY12Q9BZ98 90 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 IL1RL2Q9HB29 575 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 DDX18Q9NVP1 670 aaKnown RBP13.09□□□□□ -0.31
VAMP4-203ENST00000474047 TUBA8Q9NY65 449 aaPredicted RBP13.09□□□□□ -0.31
VAMP4-203ENST00000474047 SUCOQ9UBS9 1254 aaKnown RBP13.09□□□□□ -0.31
VAMP4-203ENST00000474047 EML6Q6ZMW3 1958 aa13.09□□□□□ -0.31
VAMP4-203ENST00000474047 PINLYPA6NC86 204 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 CCL21O00585 134 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 PLOD3O60568 738 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 ERN1O75460 977 aaKnown RBP13.08□□□□□ -0.32
VAMP4-203ENST00000474047 ESRRAP11474 423 aaPredicted RBP13.08□□□□□ -0.32
VAMP4-203ENST00000474047 PRPS2P11908 318 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 ABCD3P28288 659 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 RPL3P39023 403 aaKnown RBP13.08□□□□□ -0.32
VAMP4-203ENST00000474047 MC3RP41968 323 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 MANFP55145 182 aaKnown RBP13.08□□□□□ -0.32
VAMP4-203ENST00000474047 HSF1Q00613 529 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 ZNF155Q12901 538 aaPredicted RBP13.08□□□□□ -0.32
VAMP4-203ENST00000474047 HSPB3Q12988 150 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 DUSP8Q13202 625 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 PRSS53Q2L4Q9 553 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 TBCELQ5QJ74 424 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 C6orf136Q5SQH8 315 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 IL23RQ5VWK5 629 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 TMEM198Q66K66 360 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 SPPL2CQ8IUH8 684 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 TRIM42Q8IWZ5 723 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 OR7G2Q8NG99 324 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 OR52N2Q8NGI0 321 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 ZBED6CLQ96FA7 236 aaPredicted RBP13.08□□□□□ -0.32
VAMP4-203ENST00000474047 AMDHD1Q96NU7 426 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 DOHHQ9BU89 302 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 GLIPR2Q9H4G4 154 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 EXO5Q9H790 373 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 EXO1Q9UQ84 846 aaKnown RBP13.08□□□□□ -0.32
VAMP4-203ENST00000474047 OR10H1Q9Y4A9 318 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 CHCHD2Q9Y6H1 151 aaPredicted RBP13.08□□□□□ -0.32
VAMP4-203ENST00000474047 FLNCQ14315 2725 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 FRG2CA6NGY1 282 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 PRRG2O14669 202 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 REM1O75628 298 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 NAGAP17050 411 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 MASP1P48740 699 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 ZNHIT3Q15649 155 aaPredicted RBP13.08□□□□□ -0.32
VAMP4-203ENST00000474047 AGBL2Q5U5Z8 902 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 CES4AQ5XG92 561 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 ATG16L1Q676U5 607 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 HDXQ7Z353 690 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 PACS2Q86VP3 889 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 SLC34A3Q8N130 599 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 CIDECQ96AQ7 238 aaPredicted RBP13.08□□□□□ -0.32
VAMP4-203ENST00000474047 TLCD1Q96CP7 247 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 MTERF3Q96E29 417 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 OMA1Q96E52 524 aa13.08□□□□□ -0.32
VAMP4-203ENST00000474047 PRPF18Q99633 342 aaKnown RBP13.08□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms