RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 KLRF1Q9NZS2 232 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 CRIM1Q9NZV1 1036 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 ZNF629Q9UEG4 869 aaPredicted RBP18.05■□□□□ 0.48
COL9A3-210ENST00000472880 PLLPQ9Y342 182 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 ZNF780BQ9Y6R6 833 aa18.05■□□□□ 0.48
COL9A3-210ENST00000472880 C2CD3Q4AC94 2353 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 A0A087WUV0 522 aaPredicted RBP18.04■□□□□ 0.48
COL9A3-210ENST00000472880 PPP6CO00743 305 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 ACOX3O15254 700 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 OR4F21O95013 312 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 ESRRBO95718 433 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 BMP7P18075 431 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 PTPN6P29350 595 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 IST1P53990 364 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 TRA2BP62995 288 aaKnown RBP18.04■□□□□ 0.48
COL9A3-210ENST00000472880 MGAT2Q10469 447 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 TEX35Q5T0J7 233 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 DCST1Q5T197 706 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 SLC30A6Q6NXT4 461 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 TMEM81Q6P7N7 255 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 NUP54Q7Z3B4 507 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 CEP112Q8N8E3 955 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 FAM83FQ8NEG4 500 aaPredicted RBP18.04■□□□□ 0.48
COL9A3-210ENST00000472880 ADCY4Q8NFM4 1077 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 OR52R1Q8NGF1 315 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 NINJ1Q92982 152 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 ABTB1Q969K4 478 aaPredicted RBP18.04■□□□□ 0.48
COL9A3-210ENST00000472880 TM4SF18Q96CE8 201 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 RMND5BQ96G75 393 aaPredicted RBP18.04■□□□□ 0.48
COL9A3-210ENST00000472880 PFDN4Q9NQP4 134 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 PRODH2Q9UF12 536 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 ZNF639Q9UID6 485 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 FOXD3Q9UJU5 478 aaPredicted RBP18.04■□□□□ 0.48
COL9A3-210ENST00000472880 MED13LQ71F56 2210 aa18.04■□□□□ 0.48
COL9A3-210ENST00000472880 EXOC1LA0A1B0GW35 172 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 CD8B2A6NJW9 211 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 SNPHO15079 494 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 CBX7O95931 251 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 KRT6AP02538 564 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 KRT6BP04259 564 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 SNRPAP09012 282 aaKnown RBP18.03■□□□□ 0.48
COL9A3-210ENST00000472880 FREM3P0C091 2139 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 RHOXF2BP0C7M4 288 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 HSD3B1P14060 373 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 TAC1P20366 129 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 HSD3B2P26439 372 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 KRT6CP48668 564 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 ZNF136P52737 540 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 DCAF7P61962 342 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 CLCQ05315 142 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 DUSP2Q05923 314 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 RCAN2Q14206 197 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 LTB4RQ15722 352 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 FBXL19-AS1Q494R0 122 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 YRDCQ86U90 279 aaKnown RBP18.03■□□□□ 0.48
COL9A3-210ENST00000472880 CDYL2Q8N8U2 506 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 FAM222BQ8WU58 562 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 HGDQ93099 445 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 CNRIP1Q96F85 164 aaPredicted RBP18.03■□□□□ 0.48
COL9A3-210ENST00000472880 WDYHV1Q96HA8 205 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 NODALQ96S42 347 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 GALNT9Q9HCQ5 603 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 RASSF1Q9NS23 344 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 EHD3Q9NZN3 535 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 VPS29Q9UBQ0 182 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 MAPRE3Q9UPY8 281 aa18.03■□□□□ 0.48
COL9A3-210ENST00000472880 PRAMEF25A6NGN4 478 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 SUPT7LO94864 414 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 ACTL6AO96019 429 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 SBK3P0C264 359 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 PCSK2P16519 638 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 HSD17B3P37058 310 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 NAGLUP54802 743 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 CSTF3Q12996 717 aaKnown RBP18.02■□□□□ 0.48
COL9A3-210ENST00000472880 SNTA1Q13424 505 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 RASA2Q15283 850 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 TRMT12Q53H54 448 aaKnown RBP18.02■□□□□ 0.48
COL9A3-210ENST00000472880 LGSNQ5TDP6 509 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 FAM219BQ5XKK7 198 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 DESI1Q6ICB0 168 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 FAM180BQ6P0A1 224 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 CTHRC1Q96CG8 243 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 NTNG2Q96CW9 530 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 SERHLQ9NQF3 203 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 MCM8Q9UJA3 840 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 ZNF225Q9UK10 706 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 UTS2RQ9UKP6 389 aa18.02■□□□□ 0.48
COL9A3-210ENST00000472880 MBD3L4A6NDZ8 208 aaPredicted RBP18.01■□□□□ 0.47
COL9A3-210ENST00000472880 MBD3L3A6NE82 208 aaPredicted RBP18.01■□□□□ 0.47
COL9A3-210ENST00000472880 FRG2CA6NGY1 282 aa18.01■□□□□ 0.47
COL9A3-210ENST00000472880 MBD3L5A6NJ08 208 aaPredicted RBP18.01■□□□□ 0.47
COL9A3-210ENST00000472880 A6NNC1 897 aa18.01■□□□□ 0.47
COL9A3-210ENST00000472880 EEF1E1-BLOC1S5C9J1V9 151 aa18.01■□□□□ 0.47
COL9A3-210ENST00000472880 MANBAO00462 879 aa18.01■□□□□ 0.47
COL9A3-210ENST00000472880 EEF1E1O43324 174 aaKnown RBP18.01■□□□□ 0.47
COL9A3-210ENST00000472880 ICOSLGO75144 302 aa18.01■□□□□ 0.47
COL9A3-210ENST00000472880 UGT2B11O75310 529 aa18.01■□□□□ 0.47
COL9A3-210ENST00000472880 CYP4B1P13584 511 aa18.01■□□□□ 0.47
COL9A3-210ENST00000472880 TACR1P25103 407 aa18.01■□□□□ 0.47
COL9A3-210ENST00000472880 ECHS1P30084 290 aa18.01■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms