RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	PAQR9	Q6ZVX9	377 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	LUZP1	Q86V48	1076 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	VPS36	Q86VN1	386 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	ZSCAN30	Q86W11	494 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	ARL14	Q8N4G2	192 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	OR56B1	Q8NGI3	324 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	ITLN1	Q8WWA0	313 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	DLX4	Q92988	240 aa	Predicted RBP	3	□□□□□ -1.93
PTCD3-209	ENST00000472044	RBM18	Q96H35	190 aa	Known RBP	3	□□□□□ -1.93
PTCD3-209	ENST00000472044	FAM173A	Q9BQD7	235 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	PYGO2	Q9BRQ0	406 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	PUS3	Q9BZE2	481 aa	Known RBP	3	□□□□□ -1.93
PTCD3-209	ENST00000472044	TRIM9	Q9C026	710 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	ALG9	Q9H6U8	611 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	CLEC5A	Q9NY25	188 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	TAS2R16	Q9NYV7	291 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	SENP1	Q9P0U3	644 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	IL20RA	Q9UHF4	553 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	HOOK1	Q9UJC3	728 aa	Known RBP	3	□□□□□ -1.93
PTCD3-209	ENST00000472044	SLC9A8	Q9Y2E8	581 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	CUX2	O14529	1486 aa		3	□□□□□ -1.93
PTCD3-209	ENST00000472044	COL2A1	P02458	1487 aa	Predicted RBP	3	□□□□□ -1.93
PTCD3-209	ENST00000472044	NPIPA2	E9PIF3	369 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	EI24	O14681	340 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	TYROBP	O43914	113 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	PDE5A	O76074	875 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	NDUFA7	O95182	113 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	NUDT14	O95848	222 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	IGHG3	P01860	377 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	HOXB7	P09629	217 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	ZCCHC18	P0CG32	403 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	ACADS	P16219	412 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	ARF4	P18085	180 aa	Predicted RBP	2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	DNAJB1	P25685	340 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	PTPN6	P29350	595 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	CCND2	P30279	289 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	PRDX2	P32119	198 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	SLC7A2	P52569	658 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	BPIFB3	P59826	476 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	LMO4	P61968	165 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	TRA2B	P62995	288 aa	Known RBP	2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	HERVK_113	P63132	956 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	ERVK-8	P63133	956 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	SMC1A	Q14683	1233 aa	Known RBP	2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	ZKSCAN8	Q15776	578 aa	Predicted RBP	2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	PARP6	Q2NL67	630 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	KRTAP27-1	Q3LI81	207 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	HIGD2B	Q4VC39	106 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	CCDC92	Q53HC0	331 aa	Predicted RBP	2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	KRTAP5-11	Q6L8G4	156 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	TMEM26	Q6ZUK4	368 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	GPBP1	Q86WP2	473 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	MARCH9	Q86YJ5	346 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	TSPAN18	Q96SJ8	248 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	RPP25	Q9BUL9	199 aa	Known RBP	2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	ERVK-6	Q9BXR3	956 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	ZBP1	Q9H171	429 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	TMEM231	Q9H6L2	316 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	CENPM	Q9NSP4	180 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	CLIP2	Q9UDT6	1046 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	PLA2G4C	Q9UP65	541 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	RNF24	Q9Y225	148 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044	NCAPD2	Q15021	1401 aa		2.99	□□□□□ -1.93
PTCD3-209	ENST00000472044		K7ERI5	159 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	BCL2L11	O43521	198 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	KBTBD11	O94819	623 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	VENTX	O95231	258 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	HP	P00738	406 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	IGHV3-9	P01782	118 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	FAM200B	P0CF97	657 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	IGFBP5	P24593	272 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	RPA1	P27694	616 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	BRCC3	P46736	316 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	RPL34	P49207	117 aa	Known RBP	2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	MFAP2	P55001	183 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	HAND2	P61296	217 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	ZNF85	Q03923	595 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	C14orf28	Q4W4Y0	310 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	ACER2	Q5QJU3	275 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	FAM219B	Q5XKK7	198 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	RAET1G	Q6H3X3	334 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	LEG1	Q6P5S2	330 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	APOOL	Q6UXV4	268 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	SYVN1	Q86TM6	617 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	CDC20B	Q86Y33	519 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	HIPK1	Q86Z02	1210 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	WDR36	Q8NI36	951 aa	Known RBP	2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	CRYGN	Q8WXF5	182 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	LHX4	Q969G2	390 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	SLC25A36	Q96CQ1	311 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	APOO	Q9BUR5	198 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	KRT23	Q9C075	422 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	RAB17	Q9H0T7	212 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	TSPY26P	Q9H489	355 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	RNF41	Q9H4P4	317 aa	Predicted RBP	2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	SOHLH2	Q9NX45	425 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	RAI14	Q9P0K7	980 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	DHRS7	Q9Y394	339 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044	CLCA3P	Q9Y6N3	262 aa		2.98	□□□□□ -1.93
PTCD3-209	ENST00000472044		A0A087WWV3	80 aa		2.97	□□□□□ -1.93

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