RNA–Protein interactions for RNA: ENST00000467819.5

COL9A3-207, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL9A3, Length 993 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-207ENST00000467819 FOXC2Q99958 501 aa19.23■□□□□ 0.67
COL9A3-207ENST00000467819 EHD3Q9NZN3 535 aa19.23■□□□□ 0.67
COL9A3-207ENST00000467819 CBLCQ9ULV8 474 aa19.23■□□□□ 0.67
COL9A3-207ENST00000467819 CFL2Q9Y281 166 aa19.23■□□□□ 0.67
COL9A3-207ENST00000467819 PLEKHA6Q9Y2H5 1048 aa19.23■□□□□ 0.67
COL9A3-207ENST00000467819 ATP1B1P05026 303 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 CD99P14209 185 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 ALDH9A1P49189 494 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 SERPINB9P50453 376 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 NAGLUP54802 743 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 CDH13P55290 713 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 DUSP2Q05923 314 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 PLCXD2Q0VAA5 305 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 GALNT1Q10472 559 aaPredicted RBP19.22■□□□□ 0.67
COL9A3-207ENST00000467819 MAP4K2Q12851 820 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 LTB4RQ15722 352 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 CDC20BQ86Y33 519 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 GOT1L1Q8NHS2 421 aaPredicted RBP19.22■□□□□ 0.67
COL9A3-207ENST00000467819 TRPC4APQ8TEL6 797 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 ZNF483Q8TF39 744 aaPredicted RBP19.22■□□□□ 0.67
COL9A3-207ENST00000467819 FAM222BQ8WU58 562 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 HGDQ93099 445 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 TM4SF18Q96CE8 201 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 LCORQ96JN0 433 aaPredicted RBP19.22■□□□□ 0.67
COL9A3-207ENST00000467819 HBEGFQ99075 208 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 OSBPL11Q9BXB4 747 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 CXXC4Q9H2H0 198 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 GALNT9Q9HCQ5 603 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 KLRF1Q9NZS2 232 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 MAPRE3Q9UPY8 281 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 PLLPQ9Y342 182 aa19.22■□□□□ 0.67
COL9A3-207ENST00000467819 FLNAP21333 2647 aaKnown RBP19.21■□□□□ 0.67
COL9A3-207ENST00000467819 FAM221AA4D161 298 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 CD8B2A6NJW9 211 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 EEF1E1-BLOC1S5C9J1V9 151 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 POC1B-GALNT4F8VUJ3 575 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 EEF1E1O43324 174 aaKnown RBP19.21■□□□□ 0.67
COL9A3-207ENST00000467819 CDH16O75309 829 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 CBX7O95931 251 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 OTCP00480 354 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 NAGAP17050 411 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 CSNK2A2P19784 350 aaPredicted RBP19.21■□□□□ 0.67
COL9A3-207ENST00000467819 CNTFP26441 200 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 NUP54Q7Z3B4 507 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 C1orf52Q8N6N3 182 aaKnown RBP19.21■□□□□ 0.67
COL9A3-207ENST00000467819 CHDHQ8NE62 594 aaPredicted RBP19.21■□□□□ 0.67
COL9A3-207ENST00000467819 OR52R1Q8NGF1 315 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 UHMK1Q8TAS1 419 aaKnown RBP19.21■□□□□ 0.67
COL9A3-207ENST00000467819 NTNG2Q96CW9 530 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 MRPL57Q9BQC6 102 aaKnown RBP19.21■□□□□ 0.67
COL9A3-207ENST00000467819 TMUB1Q9BVT8 246 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 FUT8Q9BYC5 575 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 MRPL46Q9H2W6 279 aaKnown RBP19.21■□□□□ 0.67
COL9A3-207ENST00000467819 SERHLQ9NQF3 203 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 ZNF639Q9UID6 485 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 FOXD3Q9UJU5 478 aaPredicted RBP19.21■□□□□ 0.67
COL9A3-207ENST00000467819 SNX6Q9UNH7 406 aa19.21■□□□□ 0.67
COL9A3-207ENST00000467819 MBD3L4A6NDZ8 208 aaPredicted RBP19.2■□□□□ 0.66
COL9A3-207ENST00000467819 MBD3L3A6NE82 208 aaPredicted RBP19.2■□□□□ 0.66
COL9A3-207ENST00000467819 MBD3L5A6NJ08 208 aaPredicted RBP19.2■□□□□ 0.66
COL9A3-207ENST00000467819 A8MT66 165 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 TRIM49D1C9J1S8 452 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 SNPHO15079 494 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 ICOSLGO75144 302 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 UGT2B11O75310 529 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 KRT38O76015 456 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 COL6A2P12110 1019 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 DNASE1P24855 282 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 CTSSP25774 331 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 SOX18P35713 384 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 PTGDSP41222 190 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 RCAN2Q14206 197 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 TRMT12Q53H54 448 aaKnown RBP19.2■□□□□ 0.66
COL9A3-207ENST00000467819 FBXW10Q5XX13 1052 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 SLC30A6Q6NXT4 461 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 TGIF2LYQ8IUE0 185 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 RELL1Q8IUW5 271 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 C9orf106Q8NAJ2 232 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 MBD3L2Q8NHZ7 208 aaPredicted RBP19.2■□□□□ 0.66
COL9A3-207ENST00000467819 RDH11Q8TC12 318 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 FAIM2Q9BWQ8 316 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 BRF2Q9HAW0 419 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 PFDN4Q9NQP4 134 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 PSME2Q9UL46 239 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 ZNF780BQ9Y6R6 833 aa19.2■□□□□ 0.66
COL9A3-207ENST00000467819 PRAMEF25A6NGN4 478 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 TUBAL3A6NHL2 446 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 ACOX3O15254 700 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 OR4F21O95013 312 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 ESRRBO95718 433 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 CYP4B1P13584 511 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 PCSK2P16519 638 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 GCKP35557 465 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 MRPS35P82673 323 aaKnown RBP19.19■□□□□ 0.66
COL9A3-207ENST00000467819 TCHHL1Q5QJ38 904 aaPredicted RBP19.19■□□□□ 0.66
COL9A3-207ENST00000467819 TEX35Q5T0J7 233 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 TMEM81Q6P7N7 255 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 OR14L1PQ8NHC6 308 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 DCAKDQ8WVC6 231 aa19.19■□□□□ 0.66
COL9A3-207ENST00000467819 IFT81Q8WYA0 676 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms