RNA–Protein interactions for RNA: ENST00000463007.5

HDAC4-208, Transcript of histone deacetylase 4, humanhuman

TSL 1 (best)

Gene HDAC4, Length 3,158 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-208ENST00000463007 NR2F1P10589 423 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 SYN1P17600 705 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 OR3A3P47888 321 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 SPIN4Q56A73 249 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 ARSIQ5FYB1 569 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 FAM205BPQ63HN1 556 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 MARCH9Q86YJ5 346 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 TRIM63Q969Q1 353 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 UPRTQ96BW1 309 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 RNF170Q96K19 258 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 GPA33Q99795 319 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 FNDC11Q9BVV2 318 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 IL23AQ9NPF7 189 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 DYRK1BQ9Y463 629 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 ARID1AO14497 2285 aa11.75□□□□□ -0.53
HDAC4-208ENST00000463007 CIB4A0PJX0 185 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 PIPSLA2A3N6 862 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 LILRB5O75023 590 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 RECKO95980 971 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 C8orf89P0DMQ9 161 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 PRLHRP49683 370 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 BCL2L15Q5TBC7 163 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 GRHL2Q6ISB3 625 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 PODNL1Q6PEZ8 512 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 COMTD1Q86VU5 262 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 NANOGP1Q8N7R0 232 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 SIMC1Q8NDZ2 872 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 SMAP2Q8WU79 429 aaPredicted RBP11.74□□□□□ -0.53
HDAC4-208ENST00000463007 POF1BQ8WVV4 589 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 ZSCAN5AQ9BUG6 496 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 SLAMF7Q9NQ25 335 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 NKIRAS2Q9NYR9 191 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 STMN3Q9NZ72 180 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 CNOT2Q9NZN8 540 aaKnown RBP11.74□□□□□ -0.53
HDAC4-208ENST00000463007 CXXC1Q9P0U4 656 aaPredicted RBP11.74□□□□□ -0.53
HDAC4-208ENST00000463007 MN1Q10571 1320 aaPredicted RBP11.74□□□□□ -0.53
HDAC4-208ENST00000463007 GTPBP1O00178 669 aaKnown RBP11.74□□□□□ -0.53
HDAC4-208ENST00000463007 BTN3A3O00478 584 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 SLC30A4O14863 429 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 GPR37L1O60883 481 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 LALBAP00709 142 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 PEPDP12955 493 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 SLC9A3P48764 834 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 GRIN2CQ14957 1233 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 MLIPQ5VWP3 458 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 SMARCD3Q6STE5 483 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 CPA6Q8N4T0 437 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 OR4K5Q8NGD3 323 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 BTN2A2Q8WVV5 523 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 ZFPM2Q8WW38 1151 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 OTUB2Q96DC9 234 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 RNFT2Q96EX2 444 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 MAGEB10Q96LZ2 347 aaPredicted RBP11.74□□□□□ -0.53
HDAC4-208ENST00000463007 OR2AG1Q9H205 316 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 PPIL3Q9H2H8 161 aaKnown RBP11.74□□□□□ -0.53
HDAC4-208ENST00000463007 KLHL1Q9NR64 748 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF624Q9P2J8 865 aaPredicted RBP11.74□□□□□ -0.53
HDAC4-208ENST00000463007 REV1Q9UBZ9 1251 aa11.74□□□□□ -0.53
HDAC4-208ENST00000463007 REV3LO60673 3130 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 SH3D21A4FU49 640 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 LYRM1O43325 122 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 PAPLNO95428 1278 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 SRP9P49458 86 aaKnown RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 SYT14P1Q58G82 188 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 FAM27D1Q5T7N8 215 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 SLC30A6Q6NXT4 461 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 PGBD2Q6P3X8 592 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 XKRXQ6PP77 449 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 TMEM145Q8NBT3 493 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 OR8J1Q8NGP2 316 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 POP5Q969H6 163 aaKnown RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 QRFPRQ96P65 431 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 C11orf49Q9H6J7 331 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 TAAR2Q9P1P5 351 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 LOC105369274A0A096LPK9 316 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 H0YIV9 168 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 KPNA3O00505 521 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 PAHP00439 452 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 PRKAR1AP10644 381 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 MMP11P24347 488 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 CHRNEQ04844 493 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 TMEM115Q12893 351 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF630Q2M218 657 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 GLYR1Q49A26 553 aaPredicted RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 ZNF805Q5CZA5 627 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 SLCO4C1Q6ZQN7 724 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 RRM2BQ7LG56 351 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 C6orf120Q7Z4R8 191 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 OR4N4Q8N0Y3 316 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 OR56A3Q8NH54 315 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 BBS10Q8TAM1 723 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 NEIL3Q8TAT5 605 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 PUM2Q8TB72 1066 aaKnown RBP eCLIP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 SETD6Q8TBK2 473 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 PAWRQ96IZ0 340 aaKnown RBP11.73□□□□□ -0.53
HDAC4-208ENST00000463007 LRIG1Q96JA1 1093 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 COQ10AQ96MF6 247 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 SLA2Q9H6Q3 261 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 ACOXLQ9NUZ1 547 aa11.73□□□□□ -0.53
HDAC4-208ENST00000463007 NDUFB11Q9NX14 153 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms