RNA–Protein interactions for RNA: ENST00000460696.1

NPHP4-204, Transcript of nephrocystin 4, humanhuman

TSL 1 (best)

Gene NPHP4, Length 3,967 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-204ENST00000460696 KRBA1A5PL33 1030 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 CLDN4O14493 209 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 SCN2BO60939 215 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 OR6A2O95222 327 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 RAB36O95755 333 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 HIST1H2ABP04908 130 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 MAOBP27338 520 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 TGFBR1P36897 503 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 SLC9A3P48764 834 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 RGS6P49758 472 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 TMEM35AQ53FP2 167 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 SOWAHCQ53LP3 525 aaPredicted RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 SLC30A6Q6NXT4 461 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 TUBA3EQ6PEY2 450 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 CCBE1Q6UXH8 406 aaPredicted RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 FAM83HQ6ZRV2 1179 aaPredicted RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 ABHD13Q7L211 337 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 HIST3H2AQ7L7L0 130 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 FGD2Q7Z6J4 655 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 TECPR1Q7Z6L1 1165 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 GALNT12Q8IXK2 581 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 SYNPOQ8N3V7 929 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 OR5K2Q8NHB8 316 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 HIST1H2ACQ93077 130 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 CHFRQ96EP1 664 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 MYADMQ96S97 322 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 SECISBP2Q96T21 854 aaKnown RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 CD180Q99467 661 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 PRR14Q9BWN1 585 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 ZDHHC5Q9C0B5 715 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 SPNS1Q9H2V7 528 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 MVB12BQ9H7P6 319 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 SACM1LQ9NTJ5 587 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 ANTXRLA6NF34 631 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 AKAP8O43823 692 aaKnown RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 JUNBP17275 347 aaPredicted RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 SLC3A1Q07837 685 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 EIPR1Q53HC9 387 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 C6orf132Q5T0Z8 1188 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 PLAG1Q6DJT9 500 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 FAM71E1Q6IPT2 247 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 TSSK4Q6SA08 328 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 SLC36A4Q6YBV0 504 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 RBM45Q8IUH3 476 aaKnown RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 DTX3Q8N9I9 347 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 MINDY2Q8NBR6 621 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF563Q8TA94 476 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 ZFP3Q96NJ6 502 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 HDHD5Q9BXW7 423 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 SLC23A2Q9UGH3 650 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 PLEKHM1Q9Y4G2 1056 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 A8MUA0 341 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 MRPL3P09001 348 aaKnown RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 NTSR1P30989 418 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 LIPAP38571 399 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 GCGRP47871 477 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 VSX2P58304 361 aaPredicted RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF45Q02386 682 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 CSTF1Q05048 431 aaKnown RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 TDGQ13569 410 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF750Q32MQ0 723 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 LILRA6Q6PI73 481 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 PLEKHG7Q6ZR37 379 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 BCDIN3DQ7Z5W3 292 aaKnown RBP11□□□□□ -0.65
NPHP4-204ENST00000460696 OR52E4Q8NGH9 312 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 GAL3ST4Q96RP7 486 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 RACGAP1Q9H0H5 632 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 CCL27Q9Y4X3 112 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 MYO16Q9Y6X6 1858 aa11□□□□□ -0.65
NPHP4-204ENST00000460696 TCRBV21S2A2A0A5A6 115 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 WASHC1A8K0Z3 465 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 SEMA3DO95025 777 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 CPNE6O95741 557 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 PSKH1P11801 424 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 C1orf53Q5VUE5 145 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 PODNL1Q6PEZ8 512 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 WASH2PQ6VEQ5 465 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 USP51Q70EK9 711 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 NRMQ8IXM6 262 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 ZBTB8BQ8NAP8 495 aaPredicted RBP10.99□□□□□ -0.65
NPHP4-204ENST00000460696 C16orf58Q96GQ5 468 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 ZNF354BQ96LW1 612 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 PHF7Q9BWX1 381 aaPredicted RBP10.99□□□□□ -0.65
NPHP4-204ENST00000460696 ANKMY1Q9P2S6 941 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 IKZF2Q9UKS7 526 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 TMPRSS11EQ9UL52 423 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 PADI2Q9Y2J8 665 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 PCDHGA6Q9Y5G7 932 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 CORINQ9Y5Q5 1042 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 TRPM6Q9BX84 2022 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 SH3D21A4FU49 640 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 DLGAP1O14490 977 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 CTDSP2O14595 271 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 AREL1O15033 823 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 PRAMEF4O60810 478 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 KCNJ10P78508 379 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 ABATP80404 500 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 LGALS3BPQ08380 585 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 ARHGAP19Q14CB8 494 aa10.99□□□□□ -0.65
NPHP4-204ENST00000460696 DUSP6Q16828 381 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms