RNA–Protein interactions for RNA: ENST00000454830.6

CLK3-203, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 3,787 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-203ENST00000454830 UBXN7O94888 489 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 ATE1O95260 518 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 CTSBP07858 339 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 CCNYL3P0C7X3 344 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 NUP107P57740 925 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 UBE2IP63279 158 aaKnown RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 SRSF5Q13243 272 aaKnown RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 DYNC1I2Q13409 638 aaKnown RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 EXOSC7Q15024 291 aaKnown RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 MLC1Q15049 377 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 AMZ1Q400G9 498 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 LAIR2Q6ISS4 152 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 FLVCR1-AS1Q8TAF5 88 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 SFXN5Q8TD22 340 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 GPR151Q8TDV0 419 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 MOAP1Q96BY2 351 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 AHCYL2Q96HN2 611 aaKnown RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 SLC2A4RGQ9NR83 387 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 NDOR1Q9UHB4 597 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 FFAR1O14842 300 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 IGFBP1P08833 259 aaPredicted RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 HSMCR30P0CW71 290 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 CPMP14384 443 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 ARL4DP49703 201 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 ERV3-1Q14264 604 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 IQCHQ86VS3 1027 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 LSRQ86X29 649 aaPredicted RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 GKN2Q86XP6 184 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 SAMD14Q8IZD0 417 aaPredicted RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 ARL14Q8N4G2 192 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 NT5CQ8TCD5 201 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 WDR45Q9Y484 360 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 KRBA1A5PL33 1030 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 H3BMQ9 156 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 FGF17O60258 216 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 HTR1AP08908 422 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 FOSL2P15408 326 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 CCNA2P20248 432 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 SEPHS1P49903 392 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 EMX1Q04741 257 aaPredicted RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 PTGES3Q15185 160 aaKnown RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 MAPK11Q15759 364 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 SMAD2Q15796 467 aaKnown RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 MFSD4BQ5TF39 518 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 ZC3H14Q6PJT7 736 aaKnown RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 TMEM64Q6YI46 380 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 CCDC71Q8IV32 467 aaPredicted RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 ERI1Q8IV48 349 aaKnown RBP12.82□□□□□ -0.36
CLK3-203ENST00000454830 DEPDC4Q8N2C3 294 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 CLIP3Q96DZ5 547 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 HRASLS5Q96KN8 279 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 COG8Q96MW5 612 aa12.82□□□□□ -0.36
CLK3-203ENST00000454830 NPIPA5A0A0B4J1W7 369 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 ZNF99A8MXY4 864 aaPredicted RBP12.81□□□□□ -0.36
CLK3-203ENST00000454830 NPIPA7E9PJI5 369 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 TLR4O00206 839 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 WNT1P04628 370 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 PROS1P07225 676 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 NPIPA8P0DM63 369 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 CD27P26842 260 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 GGT2P36268 569 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 SMIM11AP58511 58 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 GABARAPL2P60520 117 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 STX4Q12846 297 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 SEC23BQ15437 767 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 LAIR1Q6GTX8 287 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 CASP12Q6UXS9 341 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 MCATQ8IVS2 390 aaKnown RBP12.81□□□□□ -0.36
CLK3-203ENST00000454830 COX18Q8N8Q8 333 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 OR4C15Q8NGM1 316 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 PEX11GQ96HA9 241 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 UCK2Q9BZX2 261 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 SELENONQ9NZV5 590 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 GPC6Q9Y625 555 aaPredicted RBP12.81□□□□□ -0.36
CLK3-203ENST00000454830 OR2W5A6NFC9 320 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 DUXAA6NLW8 204 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 RHPN2P1A8MT19 583 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 TOR1BO14657 336 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 DCNP07585 359 aaKnown RBP12.81□□□□□ -0.36
CLK3-203ENST00000454830 CNR2P34972 360 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 PDX1P52945 283 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 MAT1AQ00266 395 aaKnown RBP12.81□□□□□ -0.36
CLK3-203ENST00000454830 MLLT1Q03111 559 aaPredicted RBP12.81□□□□□ -0.36
CLK3-203ENST00000454830 FIGNL1Q6PIW4 674 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 ZNF681Q96N22 645 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 ZNF232Q9UNY5 417 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 A0A0G2JPF8 293 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 HNRNPCL2B2RXH8 293 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 HNRNPCL3B7ZW38 293 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 AP3D1O14617 1153 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 HNRNPCL4P0DMR1 293 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 ZNF182P17025 639 aaPredicted RBP12.81□□□□□ -0.36
CLK3-203ENST00000454830 ELAVL4P26378 380 aaKnown RBP12.81□□□□□ -0.36
CLK3-203ENST00000454830 C21orf59P57076 290 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 ZNF155Q12901 538 aaPredicted RBP12.81□□□□□ -0.36
CLK3-203ENST00000454830 PROX2Q3B8N5 592 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 NKAIN2Q5VXU1 208 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 KLHL17Q6TDP4 642 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 PLEKHM3Q6ZWE6 761 aa12.81□□□□□ -0.36
CLK3-203ENST00000454830 SVOPQ8N4V2 548 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 58.7 ms