RNA–Protein interactions for RNA: ENST00000409403.6

CLK1-202, Transcript of CDC like kinase 1, humanhuman

TSL 5

Gene CLK1, Length 1,664 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK1-202ENST00000409403 KAT6AQ92794 2004 aa5.17□□□□□ -1.58
CLK1-202ENST00000409403 TRIP12Q14669 1992 aaPredicted RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 KALRNO60229 2985 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 RELNP78509 3460 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 A0A1W2PQ09 198 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 hCG_1807616A0A1W2PRN6 198 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 OR2W5A6NFC9 320 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PPM1DO15297 605 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 XPNPEP2O43895 674 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 CNMDO75829 334 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 RHOBTB1O94844 696 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 SCELO95171 688 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 CALCAP01258 141 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 IFNA4P05014 189 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 CDK1P06493 297 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 HMBSP08397 361 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 SRCP12931 536 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 SLC2A4P14672 509 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 GGT1P19440 569 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 CHMP24386 653 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 RORAP35398 523 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PIGAP37287 484 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 GATMP50440 423 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 RORCP51449 518 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PSMD4P55036 377 aaKnown RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 CDH8P55286 799 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 DCDC1P59894 354 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 BTG1P62324 171 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 CSTF3Q12996 717 aaKnown RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 SPP2Q13103 211 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 RCAN2Q14206 197 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 TATDN3Q17R31 274 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 VPS26BQ4G0F5 336 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PTPN20Q4JDL3 420 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 ATF7IP2Q5U623 682 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 LAIR2Q6ISS4 152 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 LIN54Q6MZP7 749 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 ANKRD54Q6NXT1 300 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 DENND1BQ6P3S1 775 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 KIAA1324Q6UXG2 1013 aaKnown RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 MACC1Q6ZN28 852 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 CFAP77Q6ZQR2 320 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 EIF3MQ7L2H7 374 aaKnown RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 TMEM135Q86UB9 458 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 FUNDC1Q8IVP5 155 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 C4orf19Q8IY42 314 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 SLC22A15Q8IZD6 547 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 UBE2J2Q8N2K1 259 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 CHCHD4Q8N4Q1 142 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 ARL6IP6Q8N6S5 226 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 ARFGAP1Q8N6T3 406 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PQLC3Q8N755 202 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 COLGALT1Q8NBJ5 622 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 C19orf18Q8NEA5 215 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 SRFBP1Q8NEF9 429 aaKnown RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 DUSP18Q8NEJ0 188 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 MCPH1Q8NEM0 835 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 LPCAT1Q8NF37 534 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 RDM1Q8NG50 284 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 OR8J3Q8NGG0 315 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 OR52H1Q8NGJ2 320 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 MBD3L2Q8NHZ7 208 aaPredicted RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 JOSD2Q8TAC2 188 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 FAM110BQ8TC76 370 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PHOSPHO2Q8TCD6 241 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 STT3BQ8TCJ2 826 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 ABHD5Q8WTS1 349 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 SLC13A3Q8WWT9 602 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 SLC9A6Q92581 669 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 MYLPFQ96A32 169 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 CREB3L1Q96BA8 519 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PHF21AQ96BD5 680 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 REPS1Q96D71 796 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PPP3R2Q96LZ3 170 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 FOPNLQ96NB1 174 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 COL21A1Q96P44 957 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 NEDD4LQ96PU5 975 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 RAD9AQ99638 391 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 SDHCQ99643 169 aaPredicted RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 C1QTNF3Q9BXJ4 246 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 KRTAP3-1Q9BYR8 98 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 SRRQ9GZT4 340 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 SHARPINQ9H0F6 387 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PPIL3Q9H2H8 161 aaKnown RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 FAM124BQ9H5Z6 455 aaPredicted RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 ACTR8Q9H981 624 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 IL1RL2Q9HB29 575 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 APOBEC3GQ9HC16 384 aaKnown RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 ITM2CQ9NQX7 267 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PLCXD1Q9NUJ7 323 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 PPP1R14DQ9NXH3 145 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 RDH8Q9NYR8 311 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 NYAP2Q9P242 653 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 COPS3Q9UNS2 423 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 CMAHPQ9Y471 501 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 U3KQV3 271 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 CACNA1IQ9P0X4 2223 aa5.16□□□□□ -1.58
CLK1-202ENST00000409403 GREB1LQ9C091 1923 aaPredicted RBP5.16□□□□□ -1.58
CLK1-202ENST00000409403 LOC100506127A0A0U1RQW1 187 aa5.15□□□□□ -1.58
CLK1-202ENST00000409403 IQCMA0A1B0GVH7 501 aa5.15□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms