RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 BCL2L15Q5TBC7 163 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 DPPA2Q7Z7J5 298 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 CHPFQ8IZ52 775 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 OR51G2Q8NGK0 314 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 MAPKAP1Q9BPZ7 522 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 BIN3Q9NQY0 253 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 CNIH4Q9P003 139 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 MED11Q9P086 117 aa11.33□□□□□ -0.6
HMGB1-206ENST00000405805 LOC100509620A0A075B734 347 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 OR6C74A6NCV1 312 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PGRMC2O15173 223 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 GMFGO60234 142 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PRMT3O60678 531 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 FGBP02675 491 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 CBSLP0DN79 551 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ANXA3P12429 323 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 CBSP35520 551 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 RPS19P39019 145 aaKnown RBP11.32□□□□□ -0.6
HMGB1-206ENST00000405805 RAB5BP61020 215 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ID2Q02363 134 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 MTAPQ13126 283 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 KLHL26Q53HC5 615 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PRAMEF14Q5SWL7 426 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PRAMEF13Q5VWM6 474 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 NXNL2Q5VZ03 156 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 LIPJQ5W064 366 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 SYT14Q8NB59 555 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ZSCAN1Q8NBB4 408 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 C9orf43Q8TAL5 461 aaPredicted RBP11.32□□□□□ -0.6
HMGB1-206ENST00000405805 UFD1Q92890 307 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PDLIM5Q96HC4 596 aaKnown RBP11.32□□□□□ -0.6
HMGB1-206ENST00000405805 RADILQ96JH8 1075 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ARL6Q9H0F7 186 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PRDM9Q9NQV7 894 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 HCFC1R1Q9NWW0 138 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ENPP4Q9Y6X5 453 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 LCTP09848 1927 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 WASHC1A8K0Z3 465 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 LEFTY2O00292 366 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 LRRTM2O43300 516 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 KLK8O60259 260 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 KCNJ13O60928 360 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 KCNK2O95069 426 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 SLC35G4P0C7Q5 338 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 M6PRP20645 277 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 CD9P21926 228 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PCMT1P22061 227 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 GRK5P34947 590 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 SLAMF1Q13291 335 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 GBX1Q14549 363 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 TATDN3Q17R31 274 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 WASH2PQ6VEQ5 465 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 C6orf120Q7Z4R8 191 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PTOV1Q86YD1 416 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 MFSD4AQ8N468 514 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 CPA6Q8N4T0 437 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ISG20Q96AZ6 181 aaKnown RBP11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ARL5BQ96KC2 179 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 HRASLS5Q96KN8 279 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 CNDP2Q96KP4 475 aaKnown RBP11.32□□□□□ -0.6
HMGB1-206ENST00000405805 SLC35G5Q96KT7 338 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 AIF1LQ9BQI0 150 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 SLC6A16Q9GZN6 736 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 RFPL3O75679 317 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PTPN2P17706 415 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 TGM1P22735 817 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 HOXC8P31273 242 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 NRIP1P48552 1158 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 CXCR4P61073 352 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PLAG1Q6DJT9 500 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF782Q6ZMW2 699 aaPredicted RBP11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ZCCHC10Q8TBK6 192 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 MAFIPQ8WZ33 124 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 TFGQ92734 400 aaPredicted RBP11.32□□□□□ -0.6
HMGB1-206ENST00000405805 CPNE2Q96FN4 548 aaPredicted RBP11.32□□□□□ -0.6
HMGB1-206ENST00000405805 CRB3Q9BUF7 120 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF334Q9HCZ1 680 aaPredicted RBP11.32□□□□□ -0.6
HMGB1-206ENST00000405805 ZFR2Q9UPR6 939 aaKnown RBP11.32□□□□□ -0.6
HMGB1-206ENST00000405805 HSPE1-MOB4S4R3N1 261 aa11.32□□□□□ -0.6
HMGB1-206ENST00000405805 PAPPA2Q9BXP8 1791 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 GRXCR2A6NFK2 248 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 FAM183AA6NL82 134 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 PIP5K1CO60331 668 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 INHBBP09529 407 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 HOXB6P17509 224 aaKnown RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 BMP7P18075 431 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 APEX1P27695 318 aaKnown RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 HLA-FP30511 346 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 RPL3P39023 403 aaKnown RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 CLCNKAP51800 687 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 CHRNEQ04844 493 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 STX4Q12846 297 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 ZNF630Q2M218 657 aaPredicted RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 CDC73Q6P1J9 531 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 GLCCI1Q86VQ1 547 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 DENND6BQ8NEG7 585 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 C16orf78Q8WTQ4 265 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 C2orf15Q8WU43 125 aaKnown RBP11.31□□□□□ -0.6
HMGB1-206ENST00000405805 UBE2E3Q969T4 207 aa11.31□□□□□ -0.6
HMGB1-206ENST00000405805 MUTYHQ9UIF7 546 aa11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 45.8 ms