RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 GRID1Q9ULK0 1009 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 PLLPQ9Y342 182 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 PCDHGB3Q9Y5G1 929 aa19.89■□□□□ 0.77
CCDC28B-201ENST00000373602 ENO4A6NNW6 628 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 H3BQF6 201 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 ACOX3O15254 700 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 HOXD4P09016 255 aaPredicted RBP19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 GLI4P10075 376 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 GDF1P27539 372 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 GSTM5P46439 218 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 EMDP50402 254 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 NAGLUP54802 743 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 DCAF7P61962 342 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 MRPS35P82673 323 aaKnown RBP19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 BTKQ06187 659 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 HEPACAMQ14CZ8 416 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 NNATQ16517 81 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 C1orf185Q5T7R7 199 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 TMEM81Q6P7N7 255 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 FRMD7Q6ZUT3 714 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 PACS2Q86VP3 889 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 CCDC116Q8IYX3 515 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 LIX1Q8N485 282 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 RDH11Q8TC12 318 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 EXOSC8Q96B26 276 aaKnown RBP19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 TMEM41AQ96HV5 264 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 EBPLQ9BY08 206 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 UCK2Q9BZX2 261 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 UBQLN3Q9H347 655 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 PFDN4Q9NQP4 134 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 MYO9AB2RTY4 2548 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 EXPH5Q8NEV8 1989 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 ABCA12Q86UK0 2595 aa19.88■□□□□ 0.77
CCDC28B-201ENST00000373602 SMIM23A6NLE4 172 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 FAM90A27PA6NNH2 459 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 TOXO94900 526 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 GABRA1P14867 456 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 DRD5P21918 477 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 PPICP45877 212 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 MASP1P48740 699 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 TRPC1P48995 793 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 TFF3Q07654 80 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 CEBPEQ15744 281 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 MEX3BQ6ZN04 569 aaKnown RBP19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 NUP54Q7Z3B4 507 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 OR10Q1Q8NGQ4 319 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 EPS8L3Q8TE67 593 aaKnown RBP19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 HGDQ93099 445 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 ERP27Q96DN0 273 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 OMA1Q96E52 524 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 KCNJ16Q9NPI9 418 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 SLC35C2Q9NQQ7 365 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 OXSMQ9NWU1 459 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 EHD3Q9NZN3 535 aa19.87■□□□□ 0.77
CCDC28B-201ENST00000373602 NKX2-6A6NCS4 301 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 COPEO14579 308 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 TO15178 435 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 CDH16O75309 829 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 BCAS2O75934 225 aaPredicted RBP19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 HPNP05981 417 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 ANXA4P09525 319 aaPredicted RBP19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 IGFBP2P18065 325 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 SSTR2P30874 369 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 CDK9P50750 372 aaKnown RBP19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 PLCXD2Q0VAA5 305 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 SPDYAQ5MJ70 313 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 TRIM46Q7Z4K8 759 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 OR9A2Q8NGT5 310 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 C14orf79Q96F83 325 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 GNRHR2Q96P88 292 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 SHCBP1LQ9BZQ2 653 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 C12orf65Q9H3J6 166 aaKnown RBP19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 NPDC1Q9NQX5 325 aaPredicted RBP19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 GIMAP4Q9NUV9 329 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 ALKBH4Q9NXW9 302 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 GPR55Q9Y2T6 319 aaPredicted RBP19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 C15orf41Q9Y2V0 281 aa19.86■□□□□ 0.77
CCDC28B-201ENST00000373602 A0A0G2JNJ9 132 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 FRG2CA6NGY1 282 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 CPA3P15088 417 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 KRT4P19013 534 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 ZFP36L2P47974 494 aaKnown RBP19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 SLC18A2Q05940 514 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 ZNF763Q0D2J5 394 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 CFAP157Q5JU67 520 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 TIGD3Q6B0B8 471 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 DESI1Q6ICB0 168 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 KAT2AQ92830 837 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 LURAP1Q96LR2 239 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 NODALQ96S42 347 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 METTL7AQ9H8H3 244 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 ANKRA2Q9H9E1 313 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 Q9UFV3 132 aa19.85■□□□□ 0.77
CCDC28B-201ENST00000373602 APCP25054 2843 aa19.84■□□□□ 0.77
CCDC28B-201ENST00000373602 C15orf38-AP3S2A0A0A6YYH1 394 aa19.84■□□□□ 0.77
CCDC28B-201ENST00000373602 UGT2B11O75310 529 aa19.84■□□□□ 0.77
CCDC28B-201ENST00000373602 CRCPO75575 148 aa19.84■□□□□ 0.77
CCDC28B-201ENST00000373602 TRAPPC6AO75865 159 aa19.84■□□□□ 0.77
CCDC28B-201ENST00000373602 DDCP20711 480 aa19.84■□□□□ 0.77
CCDC28B-201ENST00000373602 ELAVL4P26378 380 aaKnown RBP19.84■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms