RNA–Protein interactions for RNA: ENST00000367248.7

SYNE1-204, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 7,165 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-204ENST00000367248 VNN3Q9NY84 501 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 COMMD3Q9UBI1 195 aa10.99□□□□□ -0.65
SYNE1-204ENST00000367248 A0A0G2JPF8 293 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 TRBV11-1A0A0K0K1C0 115 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 SAGE2PA6NJ88 616 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 HNRNPCL3B7ZW38 293 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 PPP6CO00743 305 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 HNRNPCL4P0DMR1 293 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 MEP1AQ16819 746 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 ZNF423Q2M1K9 1284 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 ACOT4Q8N9L9 421 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 MFSD2AQ8NA29 543 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 GOLM1Q8NBJ4 401 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 ZFP3Q96NJ6 502 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 MYH11P35749 1972 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 CLDN25C9JDP6 229 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 ZNF878C9JN71 531 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 INHBCP55103 352 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 AP3S2P59780 193 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 PRDX1Q06830 199 aaKnown RBP10.98□□□□□ -0.65
SYNE1-204ENST00000367248 SPEM2Q0P670 501 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 FBXO42Q6P3S6 717 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 RFLNAQ6ZTI6 216 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 SGTBQ96EQ0 304 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 BORCS8Q96FH0 119 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 MFRPQ9BY79 579 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 CDH15P55291 814 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 OMA1Q96E52 524 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 HDAC8Q9BY41 377 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 ACTRT3Q9BYD9 372 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 HOXD1Q9GZZ0 328 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 TTYH1Q9H313 450 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-204ENST00000367248 GLS2Q9UI32 602 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 LOC100509620A0A075B734 347 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 CD79AP11912 226 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 DDCP20711 480 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 VHLLQ6RSH7 139 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 USP43Q70EL4 1123 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 OR8J1Q8NGP2 316 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 TRNAU1APQ9NX07 287 aaKnown RBP10.98□□□□□ -0.65
SYNE1-204ENST00000367248 NAALAD2Q9Y3Q0 740 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 MROH6A6NGR9 719 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 UNC119BA6NIH7 251 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 TMX2-CTNND1H3BSU7 103 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 GGT2P36268 569 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 OR1D5P58170 312 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 ZXDBP98169 803 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 ARHGAP22Q7Z5H3 698 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 ARMC10Q8N2F6 343 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 OR13H1Q8NG92 308 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 SLC7A6OSQ96CW6 309 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-204ENST00000367248 BMFQ96LC9 184 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 OR5B2Q96R09 309 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 MND1Q9BWT6 205 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 C6orf106Q9H6K1 298 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-204ENST00000367248 MTHFD2LQ9H903 347 aaPredicted RBP10.98□□□□□ -0.65
SYNE1-204ENST00000367248 BTNL2Q9UIR0 455 aa10.98□□□□□ -0.65
SYNE1-204ENST00000367248 H0Y8X5 98 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 SOCS2O14508 198 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 IRF2P14316 349 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 GCGRP47871 477 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 E2F2Q14209 437 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 SLC36A3Q495N2 470 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 WDR53Q7Z5U6 358 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 ERMAPQ96PL5 475 aaPredicted RBP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 TMEM30AQ9NV96 361 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 DHCR7Q9UBM7 475 aaKnown RBP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 EMCNQ9ULC0 261 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 LRRC42Q9Y546 428 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 RAB36O95755 333 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 GGT1P19440 569 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 RAB39AQ14964 217 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 FIP1L1Q6UN15 594 aaKnown RBP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 OR2T33Q8NG76 320 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 EDEM2Q9BV94 578 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 ITPAQ9BY32 194 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 DIABLOQ9NR28 239 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 PTBP2Q9UKA9 531 aaKnown RBP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 ABCB7O75027 752 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 GABRB3P28472 473 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 CRISP1P54107 249 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 CRYZQ08257 329 aaKnown RBP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 RGNQ15493 299 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 OR51G2Q8NGK0 314 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 FKBP7Q9Y680 259 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 SMAD9O15198 467 aaKnown RBP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 C1orf105O95561 183 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 RHCEP18577 417 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 OR3A3P47888 321 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 OR3A2P47893 321 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 TPMTP51580 245 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 SMCO1Q147U7 214 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 TMEM52BQ4KMG9 183 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 RPL13AP3Q6NVV1 102 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 QSOX2Q6ZRP7 698 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 DDX51Q8N8A6 666 aaKnown RBP eCLIP10.97□□□□□ -0.65
SYNE1-204ENST00000367248 UBXN10Q96LJ8 280 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 MS4A4EQ96PG1 132 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 SORT1Q99523 831 aa10.97□□□□□ -0.65
SYNE1-204ENST00000367248 USB1Q9BQ65 265 aaKnown RBP10.97□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 90.7 ms