RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 DEFB109BQ30KR1 87 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 RFTN2Q52LD8 501 aaPredicted RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PARM1Q6UWI2 310 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 ZC3HC1Q86WB0 502 aaKnown RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 RAB43Q86YS6 212 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 DAZLQ92904 295 aaKnown RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 TMEM248Q9NWD8 314 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 CNIH4Q9P003 139 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 ACOD1A6NK06 481 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 ALDOAP04075 364 aaKnown RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SLC25A11Q02978 314 aaKnown RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 C17orf99Q6UX52 265 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 DCUN1D3Q8IWE4 304 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SLC37A3Q8NCC5 494 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 C2orf15Q8WU43 125 aaKnown RBP6.99□□□□□ -1.29
VPS13A-202ENST00000357409 SEZ6LQ9BYH1 1024 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 PNPLA3Q9NST1 481 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 DNAJB9Q9UBS3 223 aa6.99□□□□□ -1.29
VPS13A-202ENST00000357409 TRAV27A0A087WT01 109 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 FAM166BA8MTA8 275 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF705EA8MWA4 302 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 LYPLA2O95372 231 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF182P17025 639 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 PRDX3P30048 256 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 GSK3BP49841 420 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 OR5D18Q8NGL1 313 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 C8orf44Q96CB5 159 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 DGCR14Q96DF8 476 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 FUZQ9BT04 418 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 ICKQ9UPZ9 632 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 PCDHGB7Q9Y5F8 929 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 TRGV8A0A0C4DH27 118 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 LGALS8O00214 317 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 LTB4RQ15722 352 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 EIPR1Q53HC9 387 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 FAM111BQ6SJ93 734 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 PAMR1Q6UXH9 720 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 PNPLA2Q96AD5 504 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 HSH2DQ96JZ2 352 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 OR14I1A6ND48 311 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 CCRL2O00421 344 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 EDN1P05305 212 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 CTSAP10619 480 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 MSR1P21757 451 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 SPINT3P49223 89 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 ZNF566Q969W8 418 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 TAS2R10Q9NYW0 307 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 PTGESO14684 152 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 KIAA0355O15063 1070 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 MITFO75030 526 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 TRMUO75648 421 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 H6PDO95479 791 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 SERPINA2P20848 420 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 HOXA11P31270 313 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 ERVK-25P63136 954 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 EIF2B1Q14232 305 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 RFTN1Q14699 578 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 TYSND1Q2T9J0 566 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 CYBRD1Q53TN4 286 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 PQLC3Q8N755 202 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 MRPL43Q8N983 215 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 MDGA1Q8NFP4 955 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 DTNBP1Q96EV8 351 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 MUS81Q96NY9 551 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 CASD1Q96PB1 797 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 PDCD1LG2Q9BQ51 273 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 GPN2Q9H9Y4 310 aaPredicted RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 ARMC1Q9NVT9 282 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 KCNN3Q9UGI6 736 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 CARD8Q9Y2G2 431 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 LSM5Q9Y4Y9 91 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 TEX46H3BTG2 121 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 ADAMTS4O75173 837 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 NR2C1P13056 603 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 FOLR3P41439 243 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 MLF1P58340 268 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 PLA1AQ53H76 456 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 FAM219BQ5XKK7 198 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 OR5M9Q8NGP3 310 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 PCNPQ8WW12 178 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 LRRC46Q96FV0 321 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 EFCAB11Q9BUY7 163 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 TPPP3Q9BW30 176 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 NUDT15Q9NV35 164 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 AK6Q9Y3D8 172 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 NSG1A0A0A6YYJ2 146 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 EBLN1P0CF75 366 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 CTBSQ01459 385 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 RPA4Q13156 261 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 GPR33Q49SQ1 333 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 KLHL22Q53GT1 634 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 NDUFAF5Q5TEU4 345 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 SLC22A10Q63ZE4 541 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 TMEM139Q8IV31 216 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 NPWQ8N729 165 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 OR56A3Q8NH54 315 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 TRMT61AQ96FX7 289 aaKnown RBP6.98□□□□□ -1.29
VPS13A-202ENST00000357409 DHDHQ9UQ10 334 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 BBIP1A8MTZ0 92 aa6.98□□□□□ -1.29
VPS13A-202ENST00000357409 MPIG6BO95866 241 aa6.98□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms