RNA–Protein interactions for RNA: ENST00000354497.4

RTN3-204, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 1,407 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-204ENST00000354497 ZFP64Q9NPA5 681 aa10.28□□□□□ -0.76
RTN3-204ENST00000354497 EIF2B3Q9NR50 452 aaKnown RBP10.28□□□□□ -0.76
RTN3-204ENST00000354497 KLHL42Q9P2K6 505 aa10.28□□□□□ -0.76
RTN3-204ENST00000354497 TRMT6Q9UJA5 497 aaKnown RBP10.28□□□□□ -0.76
RTN3-204ENST00000354497 SOX13Q9UN79 622 aa10.28□□□□□ -0.76
RTN3-204ENST00000354497 MRPS33Q9Y291 106 aaKnown RBP10.28□□□□□ -0.76
RTN3-204ENST00000354497 MED16Q9Y2X0 877 aa10.28□□□□□ -0.76
RTN3-204ENST00000354497 RTTNQ86VV8 2226 aa10.28□□□□□ -0.76
RTN3-204ENST00000354497 COL6A5A8TX70 2615 aa10.27□□□□□ -0.76
RTN3-204ENST00000354497 H0YC42 278 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 ZNF354AO60765 605 aaPredicted RBP10.27□□□□□ -0.77
RTN3-204ENST00000354497 ERN1O75460 977 aaKnown RBP10.27□□□□□ -0.77
RTN3-204ENST00000354497 TRAPPC6AO75865 159 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 SHBGP04278 402 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 NID1P14543 1247 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 UQCRBP14927 111 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 PRKACBP22694 351 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 CTSSP25774 331 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 TIMP3P35625 211 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 VPS41P49754 854 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 CHN2P52757 468 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 TPD52P55327 224 aaPredicted RBP10.27□□□□□ -0.77
RTN3-204ENST00000354497 HSD17B7P56937 341 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 RAB38P57729 211 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 RNF4P78317 190 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 STX4Q12846 297 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 DUSP8Q13202 625 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 RUNX2Q13950 521 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 SEL1L2Q5TEA6 688 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 SLC22A10Q63ZE4 541 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 DCDC5Q6ZRR9 648 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 ANKRD53Q8N9V6 530 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 TRPV3Q8NET8 790 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 OR4K1Q8NGD4 311 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 OR5L2Q8NGL0 311 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 EEF1AKMT1Q8WVE0 214 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 SMPDL3BQ92485 455 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 ZNF669Q96BR6 464 aaPredicted RBP10.27□□□□□ -0.77
RTN3-204ENST00000354497 DACH2Q96NX9 599 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 PIP5K1AQ99755 562 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 WDR83Q9BRX9 315 aaKnown RBP10.27□□□□□ -0.77
RTN3-204ENST00000354497 ARL15Q9NXU5 204 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 DYRK1BQ9Y463 629 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 PCDHGB3Q9Y5G1 929 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 DNAJC13O75165 2243 aa10.27□□□□□ -0.77
RTN3-204ENST00000354497 MBD3L4A6NDZ8 208 aaPredicted RBP10.26□□□□□ -0.77
RTN3-204ENST00000354497 MBD3L5A6NJ08 208 aaPredicted RBP10.26□□□□□ -0.77
RTN3-204ENST00000354497 MIF4GDA9UHW6 222 aaKnown RBP10.26□□□□□ -0.77
RTN3-204ENST00000354497 C17orf105B2RV13 164 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 RGS16O15492 202 aaPredicted RBP10.26□□□□□ -0.77
RTN3-204ENST00000354497 DENRO43583 198 aaKnown RBP10.26□□□□□ -0.77
RTN3-204ENST00000354497 CNOT4O95628 575 aaKnown RBP10.26□□□□□ -0.77
RTN3-204ENST00000354497 T-ENOLP0DO92 83 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 NAGAP17050 411 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 IL32P24001 234 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 OPRM1P35372 400 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 AHRP35869 848 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 SLC1A2P43004 574 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 RGS4P49798 205 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 NR1H2P55055 460 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 REEP5Q00765 189 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 TRAP1Q12931 704 aaKnown RBP10.26□□□□□ -0.77
RTN3-204ENST00000354497 SP140Q13342 867 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 DHX34Q14147 1143 aaKnown RBP10.26□□□□□ -0.77
RTN3-204ENST00000354497 TOMM20Q15388 145 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 SF3B4Q15427 424 aaKnown RBP eCLIP10.26□□□□□ -0.77
RTN3-204ENST00000354497 KCTD19Q17RG1 926 aaPredicted RBP10.26□□□□□ -0.77
RTN3-204ENST00000354497 DUPD1Q68J44 220 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 PRSS57Q6UWY2 283 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 GSTA5Q7RTV2 222 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 STRA8Q7Z7C7 330 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 TMPRSS11BQ86T26 416 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 RETREG3Q86VR2 466 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 RASGEF1CQ8N431 466 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 LRRC57Q8N9N7 239 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 MORN4Q8NDC4 146 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 OR14A16Q8NHC5 309 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 STMN2Q93045 179 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 NEIL2Q969S2 332 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 ISL2Q96A47 359 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 PIK3IP1Q96FE7 263 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 LRRC37BQ96QE4 947 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 OR4K3Q96R72 315 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 SECISBP2Q96T21 854 aaKnown RBP10.26□□□□□ -0.77
RTN3-204ENST00000354497 DHRS9Q9BPW9 319 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 AIF1LQ9BQI0 150 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 PRM3Q9NNZ6 103 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 COPS7AQ9UBW8 275 aa10.26□□□□□ -0.77
RTN3-204ENST00000354497 hCG_2014768A0A024R1R8 64 aa10.25□□□□□ -0.77
RTN3-204ENST00000354497 LRRC3CA6NJW4 275 aa10.25□□□□□ -0.77
RTN3-204ENST00000354497 ERI3O43414 337 aaKnown RBP10.25□□□□□ -0.77
RTN3-204ENST00000354497 RAD51CO43502 376 aa10.25□□□□□ -0.77
RTN3-204ENST00000354497 B3GALT2O43825 422 aa10.25□□□□□ -0.77
RTN3-204ENST00000354497 GUCA1CO95843 209 aa10.25□□□□□ -0.77
RTN3-204ENST00000354497 TFAP2AP05549 437 aa10.25□□□□□ -0.77
RTN3-204ENST00000354497 TMIGD3P0DMS9 266 aaPredicted RBP10.25□□□□□ -0.77
RTN3-204ENST00000354497 SMIM10L1P0DMW3 83 aa10.25□□□□□ -0.77
RTN3-204ENST00000354497 FPR1P21462 350 aa10.25□□□□□ -0.77
RTN3-204ENST00000354497 CPOXP36551 454 aa10.25□□□□□ -0.77
RTN3-204ENST00000354497 CDK9P50750 372 aaKnown RBP10.25□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 63.9 ms