RNA–Protein interactions for RNA: ENST00000335508.10

SF3B1-201, Transcript of splicing factor 3b subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SF3B1, Length 6,526 nt, Biotype protein coding, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-201ENST00000335508 TSPYL5Q86VY4 417 aaPredicted RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 JAZF1Q86VZ6 243 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF671Q8TAW3 534 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 RSPRY1Q96DX4 576 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 C1GALT1C1Q96EU7 318 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 CNDP2Q96KP4 475 aaKnown RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 LMF2Q9BU23 707 aaKnown RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 UBQLN4Q9NRR5 601 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 RYDENQ9NUL5 291 aaKnown RBP6.49□□□□□ -1.37
SF3B1-201ENST00000335508 TVP23BQ9NYZ1 205 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 TMEM181Q9P2C4 612 aa6.49□□□□□ -1.37
SF3B1-201ENST00000335508 PCNX2A6NKB5 2137 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 PTPN13Q12923 2485 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 SMNDC1O75940 238 aaKnown RBP eCLIP6.48□□□□□ -1.371e-11■■■■□ 23.3
SF3B1-201ENST00000335508 UBL4AP11441 157 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 CDH11P55287 796 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ITGADQ13349 1161 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 MED22Q15528 200 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 TRIM16LQ309B1 348 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ADGRG5Q8IZF4 528 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 DEFB119Q8N690 84 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 JPH3Q8WXH2 748 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 HDAC2Q92769 488 aaKnown RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 WDR34Q96EX3 536 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 COX14Q96I36 57 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 SLC6A18Q96N87 628 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF570Q96NI8 536 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 CDX2Q99626 313 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 CTPS2Q9NRF8 586 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 EIF4E1BA6NMX2 242 aaKnown RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ANHXE9PGG2 379 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 PLOD3O60568 738 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 GJB3O75712 270 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 OR5F1O95221 314 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 EFEMP2O95967 443 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 CTSLP07711 333 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 FMO3P31513 532 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 YAP1P46937 504 aaKnown RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF423Q2M1K9 1284 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 GTDC1Q4AE62 458 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ARMC4Q5T2S8 1044 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 MZT2AQ6P582 158 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 C11orf88Q6PI97 169 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 B3GNT6Q6ZMB0 384 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 Q6ZS52 159 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 AHSA2Q719I0 299 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 PTRH1Q86Y79 214 aaKnown RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 FUNDC1Q8IVP5 155 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ANKFN1Q8N957 763 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 OR6N1Q8NGY5 312 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 BAHD1Q8TBE0 780 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 CHTF18Q8WVB6 975 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 GTPBP3Q969Y2 492 aaKnown RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 NEURL3Q96EH8 262 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 SLC46A1Q96NT5 459 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 TREX2Q9BQ50 279 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 YIPF4Q9BSR8 244 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 MRPS26Q9BYN8 205 aaKnown RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 TTYH1Q9H313 450 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 NANSQ9NR45 359 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 CLEC1BQ9P126 229 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF229Q9UJW7 825 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF726A6NNF4 738 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 TOX3O15405 576 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 OR12D1P0DN82 309 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 PNMTP11086 282 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 TRHRP34981 398 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 RRADP55042 308 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 KCNJ10P78508 379 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ID2Q02363 134 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 NR0B2Q15466 257 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 DEFB110Q30KQ9 67 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 CBLL1Q75N03 491 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 P2RY8Q86VZ1 359 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 FAM110BQ8TC76 370 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 SENP5Q96HI0 755 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 TRNT1Q96Q11 434 aaKnown RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 PHF12Q96QT6 1004 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 TIGARQ9NQ88 270 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 MKLN1Q9UL63 735 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 PRELID1Q9Y255 219 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 TTLL8A6PVC2 850 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 A8MUA0 341 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 PRPH2P23942 346 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 MYL9P24844 172 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 LCN1P31025 176 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 MRPS15P82914 257 aaKnown RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 CDKN3Q16667 212 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 RBM48Q5RL73 367 aaKnown RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 CGB2Q6NT52 195 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 KLHL24Q6TFL4 600 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 SLITRK4Q8IW52 837 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 ZNF548Q8NEK5 533 aaPredicted RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 FNDC8Q8TC99 324 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 RSC1A1Q92681 617 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 POLR2J2Q9GZM3 115 aaKnown RBP6.48□□□□□ -1.37
SF3B1-201ENST00000335508 C20orf27Q9GZN8 174 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 OR51I1Q9H343 314 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 TMEM38AQ9H6F2 299 aa6.48□□□□□ -1.37
SF3B1-201ENST00000335508 LOC100506127A0A0U1RQW1 187 aa6.48□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms