RNA–Protein interactions for RNA: ENST00000314759.5

SKA3-202, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SKA3, Length 2,919 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-202ENST00000314759 PCDH10Q9P2E7 1040 aa12.69□□□□□ -0.38
SKA3-202ENST00000314759 NFKBIL1Q9UBC1 381 aaPredicted RBP12.69□□□□□ -0.38
SKA3-202ENST00000314759 GSTK1Q9Y2Q3 226 aa12.69□□□□□ -0.38
SKA3-202ENST00000314759 GPR52Q9Y2T5 361 aa12.69□□□□□ -0.38
SKA3-202ENST00000314759 NEDD8-MDP1E9PL57 170 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 RFXAPO00287 272 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 LYRM1O43325 122 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 PROM1O43490 865 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 CTSLP07711 333 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 FGF9P31371 208 aaPredicted RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 AGFG1P52594 562 aaKnown RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 RAB40BQ12829 278 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 SPDYE7PQ495Y7 208 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 TJAP1Q5JTD0 557 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 TYW3Q6IPR3 259 aaKnown RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 CD200R1LQ6Q8B3 271 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 HMGN2P46Q86SG4 172 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 KIF18BQ86Y91 864 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 TBC1D19Q8N5T2 526 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 SLC9A6Q92581 669 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 IL17FQ96PD4 163 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 FNDC11Q9BVV2 318 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 FGF20Q9NP95 211 aaPredicted RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 SPG21Q9NZD8 308 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 EIF3KQ9UBQ5 218 aaKnown RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 PCDHGB7Q9Y5F8 929 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 A0A1W2PRU2 124 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 CIB4A0PJX0 185 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 CACNB4O00305 520 aaPredicted RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 PDPK1O15530 556 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 NCR1O76036 304 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 LALBAP00709 142 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 LIMS3P0CW19 117 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 LIMS4P0CW20 117 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 SOX18P35713 384 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 EVX1P49640 407 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 LIN28BQ6ZN17 250 aaKnown RBP eCLIP12.68□□□□□ -0.38
SKA3-202ENST00000314759 ADIPOR2Q86V24 386 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 MORN4Q8NDC4 146 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 SORCS1Q8WY21 1168 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 SMPDL3AQ92484 453 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 SENP5Q96HI0 755 aaPredicted RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 ATF6BQ99941 703 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 ARHGAP9Q9BRR9 750 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 ACAT2Q9BWD1 397 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 LINC00597Q9H2U6 94 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 EGLN3Q9H6Z9 239 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 CTPS2Q9NRF8 586 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 B3GNT2Q9NY97 397 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 CCL26Q9Y258 94 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 SHISA3A0PJX4 238 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 GTPBP1O00178 669 aaKnown RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 FABP7O15540 132 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 PRODHO43272 600 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 TRIM3O75382 744 aaPredicted RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 PDGFAP04085 211 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 CLDN20P56880 219 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 PCBP4P57723 403 aaKnown RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 CNTN1Q12860 1018 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 MAB21L1Q13394 359 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 IL18Q14116 193 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 GRIN2CQ14957 1233 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 TMEM215Q68D42 235 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 MZT2BQ6NZ67 158 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 C1orf94Q6P1W5 598 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 PLA2G15Q8NCC3 412 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 SLC37A3Q8NCC5 494 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 ZNF485Q8NCK3 441 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 OR5D16Q8NGK9 328 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 ZNF689Q96CS4 500 aaPredicted RBP12.68□□□□□ -0.38
SKA3-202ENST00000314759 F2RL3Q96RI0 385 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 SLC46A2Q9BY10 475 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 NEUROD4Q9HD90 331 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 EVA1BQ9NVM1 165 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 ITM2BQ9Y287 266 aa12.68□□□□□ -0.38
SKA3-202ENST00000314759 LILRB5O75023 590 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 EPPINO95925 133 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 SOD1P00441 154 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 PRKAR1AP10644 381 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 MTNR1AP48039 350 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 SMSP52788 366 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 UBE3AQ05086 875 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 LRRC32Q14392 662 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 INSL4Q14641 139 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 SPOUT1Q5T280 376 aaKnown RBP12.67□□□□□ -0.38
SKA3-202ENST00000314759 ZBTB37Q5TC79 503 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 KIAA1211LQ6NV74 962 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 LIPIQ6XZB0 460 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 LHFPL3Q86UP9 236 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 FAM129CQ86XR2 697 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 OR6T1Q8NGN1 323 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 LRRC20Q8TCA0 184 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 XAGE5Q8WWM1 108 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 UCN3Q969E3 161 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 UBE2E3Q969T4 207 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 EXOSC8Q96B26 276 aaKnown RBP12.67□□□□□ -0.38
SKA3-202ENST00000314759 KCNJ15Q99712 375 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 MARVELD1Q9BSK0 173 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 TMEM43Q9BTV4 400 aa12.67□□□□□ -0.38
SKA3-202ENST00000314759 PPIL3Q9H2H8 161 aaKnown RBP12.67□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms