RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 FAM86C1Q9NVL1 165 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 MARCH2Q9P0N8 246 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 FPGTO14772 594 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PRICKLE3O43900 615 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 USP2O75604 605 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 USP17L7P0C7H9 530 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 G6PDP11413 515 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PFKLP17858 780 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ARNTP27540 789 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 GZMKP49863 264 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ZNF157P51786 506 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 MANFP55145 182 aaKnown RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 PRR5P85299 388 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 MAPK14Q16539 360 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 TATDN3Q17R31 274 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 FAM46CQ5VWP2 391 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 CES5AQ6NT32 575 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 TCEANCQ8N8B7 351 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 HJURPQ8NCD3 748 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 OTUB2Q96DC9 234 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SLC39A13Q96H72 371 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 COPS8Q99627 209 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ADAM19Q9H013 955 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SYT4Q9H2B2 425 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ZDHHC11Q9H8X9 412 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SLC2A9Q9NRM0 540 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 INIPQ9NRY2 104 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SIRT5Q9NXA8 310 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 USP36Q9P275 1121 aaKnown RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 SLCO3A1Q9UIG8 710 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 MAP4K5Q9Y4K4 846 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 TRAV20A0A0B4J274 112 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 CLIC1O00299 241 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ELK4P28324 431 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 GGT5P36269 586 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 HERV-K104P61576 105 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 IKZF1Q13422 519 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 GRB7Q14451 532 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 HABP2Q14520 560 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 PEA15Q15121 130 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 C3orf38Q5JPI3 329 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 TMEM201Q5SNT2 666 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 TREML2Q5T2D2 321 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 FIGNL1Q6PIW4 674 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 FBXO16Q8IX29 292 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 JAGN1Q8N5M9 183 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SLAIN1Q8ND83 568 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 HMGCLL1Q8TB92 370 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PAQR8Q8TEZ7 354 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 COQ10AQ96MF6 247 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 NELFAQ9H3P2 528 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SLC52A3Q9NQ40 469 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SLC2A8Q9NY64 477 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 HYKKA2RU49 373 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 WASHC1A8K0Z3 465 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 A8MXE2 369 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 UPK1AO00322 258 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 CREBL2O60519 120 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 BEST1O76090 585 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ASGR1P07306 291 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ACVR2AP27037 513 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PSEN2P49810 448 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ETV1P50549 477 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 RBM39Q14498 530 aaKnown RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 LY6KQ17RY6 165 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SETMARQ53H47 684 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 SIRPB2Q5JXA9 342 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 LRRC56Q8IYG6 542 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 FTMTQ8N4E7 242 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 IQCF1Q8N6M8 205 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 NPWQ8N729 165 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 BEST4Q8NFU0 473 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 PCED1BQ96HM7 432 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 HSH2DQ96JZ2 352 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SLX1AQ9BQ83 275 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ZNF416Q9BWM5 594 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 AKIRIN1Q9H9L7 192 aaPredicted RBP6.11□□□□□ -1.43
VPS35-201ENST00000299138 SLAMF7Q9NQ25 335 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 HIF1ANQ9NWT6 349 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ASB6Q9NWX5 421 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 FBXO10Q9UK96 956 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 SNX10Q9Y5X0 201 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 ZNF780BQ9Y6R6 833 aa6.11□□□□□ -1.43
VPS35-201ENST00000299138 FAM230AA0A1W2PPH8 454 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 PDHXO00330 501 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 GOSR2O14653 212 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 TBX19O60806 448 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 SCG5P05408 212 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 OR1E1P30953 314 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 HNF1BP35680 557 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ADH7P40394 386 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 CRISP1P54107 249 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 AQP6Q13520 282 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 GUK1Q16774 197 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 XKR6Q5GH73 641 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ARL9Q6T311 187 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 ZNF852Q6ZMS4 543 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 P4HA3Q7Z4N8 544 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 PLEKHH3Q7Z736 793 aa6.1□□□□□ -1.43
VPS35-201ENST00000299138 B3GNT8Q7Z7M8 397 aa6.1□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms