RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 TPD52L3Q96J77 140 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 C7orf34Q96L11 122 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 DGAT2Q96PD7 388 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 TRNT1Q96Q11 434 aaKnown RBP13.18□□□□□ -0.3
SS18-201ENST00000269137 ZNF607Q96SK3 696 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 YIPF2Q9BWQ6 316 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 COQ10BQ9H8M1 238 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 TMEM9BQ9NQ34 198 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 NECTIN3Q9NQS3 549 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 EXD2Q9NVH0 621 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 PADI2Q9Y2J8 665 aa13.18□□□□□ -0.3
SS18-201ENST00000269137 IGKV3D-11A0A0A0MRZ8 115 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 A0A0G2JPF8 293 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 HNRNPCL2B2RXH8 293 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 HNRNPCL3B7ZW38 293 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 DPM1O60762 260 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 CBFA2T3O75081 653 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 COQ9O75208 318 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 SERPINB7O75635 380 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 SCRG1O75711 98 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 MFN2O95140 757 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 CBX7O95931 251 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 CST1P01037 141 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 FABP3P05413 133 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 HNRNPCL4P0DMR1 293 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 MAOAP21397 527 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 MAP3K8P41279 467 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 IQCCQ4KMZ1 466 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 RPS26P11Q5JNZ5 115 aaPredicted RBP13.17□□□□□ -0.3
SS18-201ENST00000269137 C1orf189Q5VU69 101 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 PWWP2BQ6NUJ5 590 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 ZBTB49Q6ZSB9 765 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 PPP1R3BQ86XI6 285 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 KRT73Q86Y46 540 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 EPHX4Q8IUS5 362 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 NAXDQ8IW45 347 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 BMPERQ8N8U9 685 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 SLC16A11Q8NCK7 471 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 RASSF5Q8WWW0 418 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 PTCHD1Q96NR3 888 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 STACQ99469 402 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 PRRX2Q99811 253 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 CIB1Q99828 191 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 C9orf16Q9BUW7 83 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 EDEM2Q9BV94 578 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 BTBD2Q9BX70 525 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 SLC7A5P2Q9GIP4 190 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 TGIF2Q9GZN2 237 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 PIGUQ9H490 435 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 ADAP2Q9NPF8 381 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 DUSP22Q9NRW4 184 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 OCIAD1Q9NX40 245 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 CALML5Q9NZT1 146 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 GPC6Q9Y625 555 aaPredicted RBP13.17□□□□□ -0.3
SS18-201ENST00000269137 KCNE3Q9Y6H6 103 aa13.17□□□□□ -0.3
SS18-201ENST00000269137 NUP210LQ5VU65 1888 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 IGLV3-12A0A075B6K2 115 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 OR2W5A6NFC9 320 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 SAC3D1A6NKF1 404 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 ACOX3O15254 700 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 LRP3O75074 770 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 OPN1SWP03999 348 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 CHRM4P08173 479 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 CCKBRP32239 447 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 RORAP35398 523 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 PDX1P52945 283 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 AQP4P55087 323 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 VLDLRP98155 873 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 ILKQ13418 452 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 IFI44LQ53G44 452 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 SLC38A9Q8NBW4 561 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 OTUB1Q96FW1 271 aaPredicted RBP13.16□□□□□ -0.3
SS18-201ENST00000269137 BTBD9Q96Q07 612 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 SPATA5L1Q9BVQ7 753 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 RUBCNLQ9H714 662 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 SLC22A11Q9NSA0 550 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 SEMA4GQ9NTN9 838 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 BAG5Q9UL15 447 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 OAZ3Q9UMX2 235 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 PCDHGB3Q9Y5G1 929 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 SYNDIG1LA6NDD5 238 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 EFCAB7A8K855 629 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 TIAF1O95411 115 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 ACP2P11117 423 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 CD247P20963 164 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 RHAGQ02094 409 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 SPEM2Q0P670 501 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 FUT7Q11130 342 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 TCF15Q12870 199 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 EXOSC7Q15024 291 aaKnown RBP13.16□□□□□ -0.3
SS18-201ENST00000269137 CSRP2Q16527 193 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 DUSP5Q16690 384 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 COX15Q7KZN9 410 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 C16orf62Q7Z3J2 963 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 OR52R1Q8NGF1 315 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 DOK4Q8TEW6 326 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 GEMIN6Q8WXD5 167 aaKnown RBP13.16□□□□□ -0.3
SS18-201ENST00000269137 SLC9A6Q92581 669 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 VPS50Q96JG6 964 aa13.16□□□□□ -0.3
SS18-201ENST00000269137 COL21A1Q96P44 957 aa13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms