RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 CMC1Q7Z7K0 106 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 CXorf67Q86X51 503 aaPredicted RBP17.68■□□□□ 0.42
CLN3-262ENST00000637699 CTAGE3PQ8IX95 158 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 ISL2Q96A47 359 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 TUBA1CQ9BQE3 449 aa17.68■□□□□ 0.42
CLN3-262ENST00000637699 TCRBV9S1A1TA0A576 114 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 ARHGEF9O43307 516 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 ABCB1P08183 1280 aaPredicted RBP17.67■□□□□ 0.42
CLN3-262ENST00000637699 SPRP35270 261 aaPredicted RBP17.67■□□□□ 0.42
CLN3-262ENST00000637699 NEK2P51955 445 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 CUL3Q13618 768 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 SLMAPQ14BN4 828 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 NNATQ16517 81 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 CPSF6Q16630 551 aaKnown RBP eCLIP17.67■□□□□ 0.42
CLN3-262ENST00000637699 OR52E8Q6IFG1 317 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 TBC1D1Q86TI0 1168 aaPredicted RBP17.67■□□□□ 0.42
CLN3-262ENST00000637699 NUDT13Q86X67 352 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 P3H2Q8IVL5 708 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 NUDT8Q8WV74 236 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 INTS12Q96CB8 462 aaKnown RBP17.67■□□□□ 0.42
CLN3-262ENST00000637699 SFXN3Q9BWM7 321 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 FETUBQ9UGM5 382 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 TSC22D4Q9Y3Q8 395 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 FBN3Q75N90 2809 aa17.67■□□□□ 0.42
CLN3-262ENST00000637699 LRRC14BA6NHZ5 514 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 FAM159BA6NKW6 160 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 H0Y3Z8 333 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 H0YIV9 168 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 LTA4HP09960 611 aaKnown RBP17.66■□□□□ 0.42
CLN3-262ENST00000637699 CPN1P15169 458 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 NT5EP21589 574 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 GCKP35557 465 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 MRPS25P82663 173 aaKnown RBP17.66■□□□□ 0.42
CLN3-262ENST00000637699 CBLBQ13191 982 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 GRTP1Q5TC63 336 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 C6orf163Q5TEZ5 329 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 C3orf62Q6ZUJ4 267 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 GCNT2Q8N0V5 402 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 OR4K14Q8NGD5 310 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 RDH11Q8TC12 318 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 SMPDL3BQ92485 455 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 NXNL1Q96CM4 212 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 NTNG2Q96CW9 530 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 REPS1Q96D71 796 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 TM9SF2Q99805 663 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 NXF5Q9H1B4 397 aaKnown RBP17.66■□□□□ 0.42
CLN3-262ENST00000637699 GALNT9Q9HCQ5 603 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 SERHLQ9NQF3 203 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 MAPRE3Q9UPY8 281 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 EIF3LQ9Y262 564 aaKnown RBP17.66■□□□□ 0.42
CLN3-262ENST00000637699 DTX4Q9Y2E6 619 aa17.66■□□□□ 0.42
CLN3-262ENST00000637699 FAM171A2A8MVW0 826 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 ICOSLGO75144 302 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 CDH16O75309 829 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 PPM1BO75688 479 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 RCBTB2O95199 551 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 MTHFD2P13995 350 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 GPX3P22352 226 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 PIK3CGP48736 1102 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 XKP51811 444 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 PFKFB4Q16877 469 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 Q5PR19 223 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 CIARTQ8N365 385 aaPredicted RBP17.65■□□□□ 0.42
CLN3-262ENST00000637699 PPM1NQ8N819 430 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 OR14L1PQ8NHC6 308 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 NODALQ96S42 347 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 NDRG3Q9UGV2 375 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 RNF11Q9Y3C5 154 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 EXPH5Q8NEV8 1989 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 ARID1AO14497 2285 aa17.65■□□□□ 0.42
CLN3-262ENST00000637699 SYCE1LA8MT33 242 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 H7C1Q1 480 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 SNPHO15079 494 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 SMPD2O60906 423 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 GFAPP14136 432 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 CRABP2P29373 138 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 KBTBD12Q3ZCT8 623 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 SLC30A6Q6NXT4 461 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 ENPP6Q6UWR7 440 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 NUP54Q7Z3B4 507 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 PRIMA1Q86XR5 153 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 TRIM42Q8IWZ5 723 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 C17orf53Q8N3J3 647 aaPredicted RBP17.64■□□□□ 0.41
CLN3-262ENST00000637699 C17orf47Q8NEP4 570 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 OR7G1Q8NGA0 311 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 KCTD4Q8WVF5 259 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 ZNF592Q92610 1267 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 WNT2BQ93097 391 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 ZFP3Q96NJ6 502 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 OSBPL11Q9BXB4 747 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 DPH5Q9H2P9 285 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 IPPKQ9H8X2 491 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 EHD3Q9NZN3 535 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 KLRF1Q9NZS2 232 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 C6orf203Q9P0P8 240 aaPredicted RBP17.64■□□□□ 0.41
CLN3-262ENST00000637699 BCAP29Q9UHQ4 241 aa17.64■□□□□ 0.41
CLN3-262ENST00000637699 KIAA1324LA8MWY0 1029 aaPredicted RBP17.63■□□□□ 0.41
CLN3-262ENST00000637699 A8MXE2 369 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 CCDC188H7C350 402 aa17.63■□□□□ 0.41
CLN3-262ENST00000637699 CPMP14384 443 aa17.63■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms