RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 ZNF474Q6S9Z5 364 aaPredicted RBP5.55□□□□□ -1.52
VRK3-220ENST00000600259 FRA10AC1Q70Z53 315 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 CYS1Q717R9 158 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 LRRC70Q7Z2Q7 622 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 LUZP2Q86TE4 346 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 PACS2Q86VP3 889 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 TRIM42Q8IWZ5 723 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 PRR22Q8IZ63 422 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 TAGAPQ8N103 731 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 SIMC1Q8NDZ2 872 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 FBXO36Q8NEA4 188 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 C17orf47Q8NEP4 570 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 WDR20Q8TBZ3 569 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 UBTD2Q8WUN7 234 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 RNF138Q8WVD3 245 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 WNT2BQ93097 391 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 UBE2E3Q969T4 207 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 INTS12Q96CB8 462 aaKnown RBP5.55□□□□□ -1.52
VRK3-220ENST00000600259 STARD4Q96DR4 205 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 Q96MF0 132 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 ZFP3Q96NJ6 502 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 HS3ST6Q96QI5 342 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 KRT12Q99456 494 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 MTERF1Q99551 399 aaKnown RBP5.55□□□□□ -1.52
VRK3-220ENST00000600259 PELOQ9BRX2 385 aaKnown RBP5.55□□□□□ -1.52
VRK3-220ENST00000600259 BDH2Q9BUT1 245 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 SFXN3Q9BWM7 321 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 OR2B2Q9GZK3 357 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 NXF5Q9H1B4 397 aaKnown RBP5.55□□□□□ -1.52
VRK3-220ENST00000600259 OR10A5Q9H207 317 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 CD274Q9NZQ7 290 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 ADGRE2Q9UHX3 823 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 PHF11Q9UIL8 331 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 CES1P1Q9UKY3 287 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 SNX12Q9UMY4 172 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 EXO1Q9UQ84 846 aaKnown RBP5.55□□□□□ -1.52
VRK3-220ENST00000600259 DTX4Q9Y2E6 619 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 USF3Q68DE3 2245 aa5.55□□□□□ -1.52
VRK3-220ENST00000600259 A0A1W2PNV4 684 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 LRRC14BA6NHZ5 514 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 H0YIV9 168 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 PLOD2O00469 737 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 OR10H2O60403 315 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 ZIC3O60481 467 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 SMPD2O60906 423 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 ERN1O75460 977 aaKnown RBP5.54□□□□□ -1.52
VRK3-220ENST00000600259 PPM1BO75688 479 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 CBR3O75828 277 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 SEC31AO94979 1220 aaKnown RBP5.54□□□□□ -1.52
VRK3-220ENST00000600259 SOX30O94993 753 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 CGAP01215 116 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 CTAGE8P0CG41 777 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 PCNAP12004 261 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 CYP4B1P13584 511 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 PAX1P15863 534 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 GPX3P22352 226 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 CRYGSP22914 178 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 SSTR1P30872 391 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 CCKARP32238 428 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 KIR2DL2P43627 348 aaPredicted RBP5.54□□□□□ -1.52
VRK3-220ENST00000600259 ARL4CP56559 192 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 CLDN18P56856 261 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 B3GALT5-AS1P59052 145 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 DUSP2Q05923 314 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 MAP4K2Q12851 820 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 PDIA2Q13087 525 aaKnown RBP5.54□□□□□ -1.52
VRK3-220ENST00000600259 CUL3Q13618 768 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 RCAN2Q14206 197 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 LIPJQ5W064 366 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 SLC30A6Q6NXT4 461 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 FAM111BQ6SJ93 734 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 ANGPTL8Q6UXH0 198 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 TAOK1Q7L7X3 1001 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 NUP54Q7Z3B4 507 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 BTLAQ7Z6A9 289 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 YTHDF3Q7Z739 585 aaKnown RBP5.54□□□□□ -1.52
VRK3-220ENST00000600259 P3H2Q8IVL5 708 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 CTAGE4Q8IX94 777 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 SLC35F6Q8N357 371 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 L3MBTL4Q8NA19 623 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 OR7G1Q8NGA0 311 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 OR1J4Q8NGS1 313 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 STAG3L4Q8TBR4 150 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 NANOS1Q8WY41 292 aaKnown RBP5.54□□□□□ -1.52
VRK3-220ENST00000600259 PIGTQ969N2 578 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 RBBP8Q99708 897 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 TM9SF2Q99805 663 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 PIGQQ9BRB3 760 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 GSX2Q9BZM3 304 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 PIGMQ9H3S5 423 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 ALG9Q9H6U8 611 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 GALNT9Q9HCQ5 603 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 SERHLQ9NQF3 203 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 LYARQ9NX58 379 aaKnown RBP5.54□□□□□ -1.52
VRK3-220ENST00000600259 NSMCE4AQ9NXX6 385 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 C6orf203Q9P0P8 240 aaPredicted RBP5.54□□□□□ -1.52
VRK3-220ENST00000600259 NDRG3Q9UGV2 375 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 TRPS1Q9UHF7 1281 aa5.54□□□□□ -1.52
VRK3-220ENST00000600259 MRPS18CQ9Y3D5 142 aaKnown RBP5.54□□□□□ -1.52
VRK3-220ENST00000600259 PCDHGA11Q9Y5H2 935 aa5.54□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms