RNA–Protein interactions for RNA: ENST00000595028.1

TRIM28-205, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 486 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-205ENST00000595028 EHD3Q9NZN3 535 aa13.92□□□□□ -0.18
TRIM28-205ENST00000595028 ZNF639Q9UID6 485 aa13.92□□□□□ -0.18
TRIM28-205ENST00000595028 RAB21Q9UL25 225 aa13.92□□□□□ -0.18
TRIM28-205ENST00000595028 CHCHD2Q9Y6H1 151 aaPredicted RBP13.92□□□□□ -0.18
TRIM28-205ENST00000595028 DNHD1Q96M86 4753 aa13.92□□□□□ -0.18
TRIM28-205ENST00000595028 FAM166BA8MTA8 275 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 AZIN1O14977 448 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 ZNHIT1O43257 154 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 HNRNPRO43390 633 aaKnown RBP13.91□□□□□ -0.18
TRIM28-205ENST00000595028 CDC40O60508 579 aaKnown RBP eCLIP13.91□□□□□ -0.18
TRIM28-205ENST00000595028 CBX7O95931 251 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 CNR1P21554 472 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 PRPH2P23942 346 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 ALDH3A1P30838 453 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 SOX18P35713 384 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 NR0B1P51843 470 aaKnown RBP13.91□□□□□ -0.18
TRIM28-205ENST00000595028 PPIAP62937 165 aaKnown RBP13.91□□□□□ -0.18
TRIM28-205ENST00000595028 FOXO1Q12778 655 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 MAP4K2Q12851 820 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 DUSP8Q13202 625 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 HEPACAMQ14CZ8 416 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 EXOSC7Q15024 291 aaKnown RBP13.91□□□□□ -0.18
TRIM28-205ENST00000595028 RPS6KA2Q15349 733 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 NTRK2Q16620 822 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 KRT71Q3SY84 523 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 KANK2Q63ZY3 851 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 MTFR2Q6P444 385 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 RNF165Q6ZSG1 346 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 SLC22A16Q86VW1 577 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 SAMD14Q8IZD0 417 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-205ENST00000595028 ADCY4Q8NFM4 1077 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 OR52N2Q8NGI0 321 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 CDC26Q8NHZ8 85 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 FAM76AQ8TAV0 307 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 ADIPOR1Q96A54 375 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 MECRQ9BV79 373 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 ZDHHC11Q9H8X9 412 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 IL1RL2Q9HB29 575 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 MYNNQ9NPC7 610 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 PFDN4Q9NQP4 134 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 GIMAP4Q9NUV9 329 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 TUBA8Q9NY65 449 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-205ENST00000595028 SENP1Q9P0U3 644 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 ENTPD4Q9Y227 616 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 CFL2Q9Y281 166 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 DTX4Q9Y2E6 619 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 CCL27Q9Y4X3 112 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 POLR3HQ9Y535 204 aaPredicted RBP13.91□□□□□ -0.18
TRIM28-205ENST00000595028 PTGDR2Q9Y5Y4 395 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 CACNA1CQ13936 2221 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 NINQ8N4C6 2090 aa13.91□□□□□ -0.18
TRIM28-205ENST00000595028 CCDC168Q8NDH2 2452 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 NCKAP5O14513 1909 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 MED13LQ71F56 2210 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 A0A1B0GTH9 108 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 NPIPB8E9PQR5 432 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 NPHS1O60500 1241 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 NEFHP12036 1026 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 CREB1P16220 341 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 DDCP20711 480 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 PIGAP37287 484 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 TMED10P49755 219 aaKnown RBP13.9□□□□□ -0.18
TRIM28-205ENST00000595028 MRPS35P82673 323 aaKnown RBP13.9□□□□□ -0.18
TRIM28-205ENST00000595028 CEBPEQ15744 281 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 HYAL4Q2M3T9 481 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 ZNF628Q5EBL2 1059 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 PRAMEF20Q5VT98 475 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 SLC22A10Q63ZE4 541 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 ARHGAP11AQ6P4F7 1023 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 TMEM64Q6YI46 380 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 FAM109AQ8N4B1 249 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 SIMC1Q8NDZ2 872 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 OR9A2Q8NGT5 310 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 METTL2AQ96IZ6 378 aaKnown RBP13.9□□□□□ -0.18
TRIM28-205ENST00000595028 ITPAQ9BY32 194 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 NXF5Q9H1B4 397 aaKnown RBP13.9□□□□□ -0.18
TRIM28-205ENST00000595028 SLC35C2Q9NQQ7 365 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 CNIH4Q9P003 139 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 BCAP29Q9UHQ4 241 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 CNOT11Q9UKZ1 510 aaKnown RBP13.9□□□□□ -0.18
TRIM28-205ENST00000595028 FIS1Q9Y3D6 152 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 DCHS2Q6V1P9 2916 aa13.9□□□□□ -0.18
TRIM28-205ENST00000595028 CAPN14A8MX76 684 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 PRRG2O14669 202 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 TP53I11O14683 189 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 TYROBPO43914 113 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 CHRNGP07510 517 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 PCSK2P16519 638 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 PTGS2P35354 604 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 MAGEA5P43359 124 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 NRG3P56975 720 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 FBXW4P57775 412 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 KCNJ2P63252 427 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 NNATQ16517 81 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 TRMT12Q53H54 448 aaKnown RBP13.89□□□□□ -0.19
TRIM28-205ENST00000595028 FAM71E1Q6IPT2 247 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 RPTNQ6XPR3 784 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 IKBIPQ70UQ0 350 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 CD163Q86VB7 1156 aa13.89□□□□□ -0.19
TRIM28-205ENST00000595028 TMEM251Q8N6I4 163 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms