RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 RIPPLY3P57055 190 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 PSG7Q13046 419 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 SCARB2Q14108 478 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 HEPACAMQ14CZ8 416 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 MEP1BQ16820 701 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 EPC2Q52LR7 807 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 PRAMEF8Q5VWM4 474 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 IRGCQ6NXR0 463 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 MOB1BQ7L9L4 216 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 ZNF677Q86XU0 584 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 SYCP3Q8IZU3 236 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 NUP93Q8N1F7 819 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 LINC01555Q8NAE3 123 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 ATAD1Q8NBU5 361 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 OR7G3Q8NG95 312 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 RNASE8Q8TDE3 154 aaKnown RBP1.87□□□□□ -2.11
VPS35-207ENST00000568191 GGHQ92820 318 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 STARD4Q96DR4 205 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 MRPL53Q96EL3 112 aaKnown RBP1.87□□□□□ -2.11
VPS35-207ENST00000568191 CXorf58Q96LI9 332 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 TECTBQ96PL2 329 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 FAM173AQ9BQD7 235 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 JPH2Q9BR39 696 aaPredicted RBP1.87□□□□□ -2.11
VPS35-207ENST00000568191 DESI2Q9BSY9 194 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 UTP14AQ9BVJ6 771 aaKnown RBP1.87□□□□□ -2.11
VPS35-207ENST00000568191 HES7Q9BYE0 225 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 DCTPP1Q9H773 170 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 TMEM206Q9H813 350 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 GRPEL1Q9HAV7 217 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 SLC25A19Q9HC21 320 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 CNIH4Q9P003 139 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 TUBGCP4Q9UGJ1 667 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 EXOC7Q9UPT5 735 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 PDE10AQ9Y233 779 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 KCNK6Q9Y257 313 aa1.87□□□□□ -2.11
VPS35-207ENST00000568191 FAM231BA6NCW3 169 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 YJEFN3A6XGL0 299 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 FCER2P06734 321 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 CT45A8P0DMV1 189 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 CT45A9P0DMV2 189 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 UCP1P25874 307 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 DIO3P55073 304 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 ZNF45Q02386 682 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 LRRC63Q05C16 580 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 C17orf67Q0P5P2 114 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 BFSP1Q12934 665 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 RPS6KA1Q15418 735 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 HAGHQ16775 308 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 ANKRD20A4Q4UJ75 823 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 ANKRD20A8PQ5CZ79 823 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 CT45A2Q5DJT8 189 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 MS4A13Q5J8X5 152 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 ANKRD20A2Q5SQ80 823 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 SEL1L2Q5TEA6 688 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 ANKRD20A1Q5TYW2 823 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 ANKRD20A3Q5VUR7 823 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 CD164L2Q6UWJ8 174 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 PIWIL3Q7Z3Z3 882 aaKnown RBP1.86□□□□□ -2.11
VPS35-207ENST00000568191 H1FOOQ8IZA3 346 aaPredicted RBP1.86□□□□□ -2.11
VPS35-207ENST00000568191 LINC00518Q8N0U6 118 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 FIBINQ8TAL6 211 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 ANKRD49Q8WVL7 239 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 BIRC7Q96CA5 298 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 MLPHQ9BV36 600 aaPredicted RBP1.86□□□□□ -2.11
VPS35-207ENST00000568191 C19orf24Q9BVV8 132 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 NUSAP1Q9BXS6 441 aaKnown RBP1.86□□□□□ -2.11
VPS35-207ENST00000568191 EHD1Q9H4M9 534 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 NANOGQ9H9S0 305 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 MIEF1Q9NQG6 463 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 DNAJC11Q9NVH1 559 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 MRTO4Q9UKD2 239 aaKnown RBP1.86□□□□□ -2.11
VPS35-207ENST00000568191 CDH7Q9ULB5 785 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 EMCNQ9ULC0 261 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 CA5BQ9Y2D0 317 aa1.86□□□□□ -2.11
VPS35-207ENST00000568191 IGLV3-16A0A075B6K0 115 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 C5orf51A6NDU8 294 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 MFSD2BA6NFX1 497 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 TYROBPO43914 113 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 TGDSO95455 350 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 CPNE6O95741 557 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 IGHV3-9P01782 118 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 CCDC166P0CW27 439 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 TPBGLP0DKB5 382 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 CT45A10P0DMU9 189 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 GHRP10912 638 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 PTPN4P29074 926 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 UGT1A3P35503 534 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 SMSP52788 366 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 METAP1P53582 386 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 ST8SIA6P61647 398 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 RPS8P62241 208 aaKnown RBP1.85□□□□□ -2.11
VPS35-207ENST00000568191 YWHAHQ04917 246 aaPredicted RBP1.85□□□□□ -2.11
VPS35-207ENST00000568191 MSLNQ13421 630 aaPredicted RBP1.85□□□□□ -2.11
VPS35-207ENST00000568191 MPPE1Q53F39 396 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 RTL6Q6ICC9 239 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 Q6P435 159 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 ADAMTSL5Q6ZMM2 481 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 ASRGL1Q7L266 308 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 GPR142Q7Z601 462 aa1.85□□□□□ -2.11
VPS35-207ENST00000568191 TMEM179BQ7Z7N9 219 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms