RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 DACH2Q96NX9 599 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 TM9SF2Q99805 663 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ZNF717Q9BY31 904 aaPredicted RBP8.38□□□□□ -1.07
HDDC3-204ENST00000559834 UGT2B28Q9BY64 529 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 METTL7AQ9H8H3 244 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 DLL4Q9NR61 685 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 JKAMPQ9P055 326 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ADAM29Q9UKF5 820 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 PSME2Q9UL46 239 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 UTP11Q9Y3A2 253 aaKnown RBP8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ARHGAP21Q5T5U3 1957 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 ITPR3Q14573 2671 aa8.38□□□□□ -1.07
HDDC3-204ENST00000559834 CELSR1Q9NYQ6 3014 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 GOLGA6L10A6NI86 522 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 CLCA1A8K7I4 914 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 FAM171A2A8MVW0 826 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 GNB5O14775 395 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 ARHGEF9O43307 516 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 PPM1BO75688 479 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 CBR3O75828 277 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 KLHL2O95198 593 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 RCBTB2O95199 551 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 GBAP04062 536 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 C2P06681 752 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 KLK1P06870 262 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 ABCB1P08183 1280 aaPredicted RBP8.37□□□□□ -1.07
HDDC3-204ENST00000559834 FREM3P0C091 2139 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 RHOXF2BP0C7M4 288 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 TMIGD3P0DMS9 266 aaPredicted RBP8.37□□□□□ -1.07
HDDC3-204ENST00000559834 CPMP14384 443 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 CPN1P15169 458 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 PORP16435 677 aaPredicted RBP8.37□□□□□ -1.07
HDDC3-204ENST00000559834 ABCD3P28288 659 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 PTPN6P29350 595 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 ADSLP30566 484 aaPredicted RBP8.37□□□□□ -1.07
HDDC3-204ENST00000559834 GMPRP36959 345 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 MAGEA4P43358 317 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 CPA2P48052 419 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 NAGLUP54802 743 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 DIO3P55073 304 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 DCAF7P61962 342 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 MAP4K2Q12851 820 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 GAB1Q13480 694 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 WIPI1Q5MNZ9 446 aaPredicted RBP8.37□□□□□ -1.07
HDDC3-204ENST00000559834 CCNYL2Q5T2Q4 361 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 SHEQ5VZ18 495 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 BICRALQ6AI39 1079 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 TTC19Q6DKK2 380 aaPredicted RBP8.37□□□□□ -1.07
HDDC3-204ENST00000559834 TMEM81Q6P7N7 255 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 GOLGA7Q7Z5G4 137 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 FAM83FQ8NEG4 500 aaPredicted RBP8.37□□□□□ -1.07
HDDC3-204ENST00000559834 WDR20Q8TBZ3 569 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 TRPC4APQ8TEL6 797 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 FBF1Q8TES7 1133 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 KCTD4Q8WVF5 259 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 UCN3Q969E3 161 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 C18orf12Q96KH6 178 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 SFXN3Q9BWM7 321 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 RBM24Q9BX46 236 aaKnown RBP8.37□□□□□ -1.07
HDDC3-204ENST00000559834 PIGMQ9H3S5 423 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 PLEKHF2Q9H8W4 249 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 BEX4Q9NWD9 120 aaPredicted RBP8.37□□□□□ -1.07
HDDC3-204ENST00000559834 NDRG3Q9UGV2 375 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 EIF3LQ9Y262 564 aaKnown RBP8.37□□□□□ -1.07
HDDC3-204ENST00000559834 RNF11Q9Y3C5 154 aa8.37□□□□□ -1.07
HDDC3-204ENST00000559834 ANKHD1Q8IWZ3 2542 aaKnown RBP8.36□□□□□ -1.07
HDDC3-204ENST00000559834 C1orf226A1L170 272 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 KDM4EB2RXH2 506 aaPredicted RBP8.36□□□□□ -1.07
HDDC3-204ENST00000559834 H0Y3Z8 333 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 ACOX3O15254 700 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 ICOSLGO75144 302 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 CT62P0C5K7 136 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 CSNK2A2P19784 350 aaPredicted RBP8.36□□□□□ -1.07
HDDC3-204ENST00000559834 CHMP24386 653 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 TYK2P29597 1187 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 HOXC12P31275 282 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 CCNG1P51959 295 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 MAPK12P53778 367 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 PLTPP55058 493 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 NKX6-1P78426 367 aaPredicted RBP8.36□□□□□ -1.07
HDDC3-204ENST00000559834 MRPS25P82663 173 aaKnown RBP8.36□□□□□ -1.07
HDDC3-204ENST00000559834 SRYQ05066 204 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 LTBQ06643 244 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 IFT88Q13099 833 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 MROH9Q5TGP6 573 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 FRG2Q64ET8 278 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 ANGPTL8Q6UXH0 198 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 YRDCQ86U90 279 aaKnown RBP8.36□□□□□ -1.07
HDDC3-204ENST00000559834 CCDC25Q86WR0 208 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 TRIM42Q8IWZ5 723 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 PRR22Q8IZ63 422 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 VWA5B2Q8N398 1253 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 C9orf106Q8NAJ2 232 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 WFDC11Q8NEX6 87 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 SPATA4Q8NEY3 305 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 OR14L1PQ8NHC6 308 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 WNT2BQ93097 391 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 NTNG2Q96CW9 530 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 TMCO6Q96DC7 493 aa8.36□□□□□ -1.07
HDDC3-204ENST00000559834 LCORQ96JN0 433 aaPredicted RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms