RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, human

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
VPS13C-208	ENST00000559119	RAB40C	Q96S21	281 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	ANKRD2	Q9GZV1	360 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	APOBEC3B	Q9UH17	382 aa	Known RBP	2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	LCMT1	Q9UIC8	334 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	DDX19B	Q9UMR2	479 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	ATP10A	O60312	1499 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	GRIN2B	Q13224	1484 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	CLTCL1	P53675	1640 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	FAM135A	Q9P2D6	1515 aa		2.68	□□□□□ -1.98
VPS13C-208	ENST00000559119	ADGRL2	O95490	1459 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	PLA2R1	Q13018	1463 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	CCDC141	Q6ZP82	1450 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	ATAD2B	Q9ULI0	1458 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	RTL1	A6NKG5	1358 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	POLR3A	O14802	1390 aa	Predicted RBP	2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	IGLV8-61	A0A075B6I0	122 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119		H0YHG0	523 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	STBD1	O95210	358 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	SMC2	O95347	1197 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	RPN1	P04843	607 aa	Known RBP	2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	PSG2	P11465	335 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	AKR1B1	P15121	316 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	GJB2	P29033	226 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	EEF1D	P29692	281 aa	Known RBP	2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	NPBWR1	P48145	328 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	PPP5C	P53041	499 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	NAGLU	P54802	743 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	UBE2H	P62256	183 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	SARNP	P82979	210 aa	Known RBP	2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	SERTAD2	Q14140	314 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	PSMD6	Q15008	389 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	CDO1	Q16878	200 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	TPD52L1	Q16890	204 aa	Predicted RBP	2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	TCP11X2	Q5H9J9	407 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	CCDC158	Q5M9N0	1113 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	CAPN13	Q6MZZ7	669 aa	Predicted RBP	2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	ZSCAN25	Q6NSZ9	544 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	ANKRD23	Q86SG2	305 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	PLA2G4D	Q86XP0	818 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	TIGD4	Q8IY51	512 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	OR8H2	Q8N162	312 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	CCDC197	Q8NCU1	140 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	CHDH	Q8NE62	594 aa	Predicted RBP	2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	NEK11	Q8NG66	645 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	OR4F5	Q8NH21	305 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	RAB3C	Q96E17	227 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	TESK2	Q96S53	571 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	INPP5K	Q9BT40	448 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	TNMD	Q9H2S6	317 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	ST6GALNAC4	Q9H4F1	302 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	PATZ1	Q9HBE1	687 aa	Known RBP	2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	PLEK2	Q9NYT0	353 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	CIDEB	Q9UHD4	219 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	NRBP1	Q9UHY1	535 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	CC2D2A	Q9P2K1	1620 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	DAPK1	P53355	1430 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	NUP160	Q12769	1436 aa		2.67	□□□□□ -1.98
VPS13C-208	ENST00000559119	CEP170	Q5SW79	1584 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	MYOM2	P54296	1465 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	ABCC10	Q5T3U5	1492 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	KDR	P35968	1356 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	KIF24	Q5T7B8	1368 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	RPAP1	Q9BWH6	1393 aa	Predicted RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119		A0A087WV48	116 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	ILVBL	A1L0T0	632 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119		B4DXG7	233 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	ANXA9	O76027	345 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	VIM	P08670	466 aa	Known RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	CCDC192	P0DO97	292 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	GCFC2	P16383	781 aa	Known RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	CHML	P26374	656 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	XCR1	P46094	333 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	EFNA3	P52797	238 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	RWDD2B	P57060	319 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	TLE4	Q04727	773 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	SMC1A	Q14683	1233 aa	Known RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	DNAJC21	Q5F1R6	531 aa	Known RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	FAM91A1	Q658Y4	838 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	PM20D1	Q6GTS8	502 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	RBM43	Q6ZSC3	357 aa	Known RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	CCDC186	Q7Z3E2	898 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	ERI1	Q8IV48	349 aa	Known RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	ZNF561	Q8N587	486 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	SAP25	Q8TEE9	199 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	TFB1M	Q8WVM0	346 aa	Known RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	PCED1B	Q96HM7	432 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	SH3GL3	Q99963	347 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	THUMPD2	Q9BTF0	503 aa	Known RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	ST6GALNAC5	Q9BVH7	336 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	NKIRAS2	Q9NYR9	191 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	DPM3	Q9P2X0	92 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	ATP6V1D	Q9Y5K8	247 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	PRDM15	P57071	1507 aa	Predicted RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	HMGXB3	Q12766	1538 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	ABCC5	O15440	1437 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	ERBIN	Q96RT1	1412 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	SPAG9	O60271	1321 aa	Known RBP	2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	CFAP74	Q9C0B2	1584 aa		2.66	□□□□□ -1.98
VPS13C-208	ENST00000559119	CFTR	P13569	1480 aa		2.65	□□□□□ -1.98

Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms