RNA–Protein interactions for RNA: ENST00000557005.1

SYNE2-223, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 2

Gene SYNE2, Length 5,804 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-223	ENST00000557005	TRAM2	Q15035	370 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	TP53I3	Q53FA7	332 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	XKR7	Q5GH72	579 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PXDC1	Q5TGL8	231 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	KHDRBS2	Q5VWX1	349 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC8B1	Q6J4K2	584 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC27A4	Q6P1M0	643 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PEG10	Q86TG7	708 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	GALNT13	Q8IUC8	556 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	GID4	Q8IVV7	300 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	CCDC116	Q8IYX3	515 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	HORMAD2	Q8N7B1	307 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	INO80E	Q8NBZ0	244 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	C1orf216	Q8TAB5	229 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	THEM6	Q8WUY1	208 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR5P2	Q8WZ92	322 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	S100A16	Q96FQ6	103 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FUBP3	Q96I24	572 aa	Known RBP eCLIP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	THSD1	Q9NS62	852 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	TMEM39A	Q9NV64	488 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	C14orf105	Q9NVL8	296 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	TXNL4B	Q9NX01	149 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	YIPF1	Q9Y548	306 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	DRGX	A6NNA5	263 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF705E	A8MWA4	302 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	C1QTNF3-AMACR	E9PGA6	284 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	EIF1AY	O14602	144 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FLRT2	O43155	660 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	CXCL14	O95715	111 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	APOC3	P02656	99 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ENDOU	P21128	410 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	GIF	P27352	417 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	AFF1	P51825	1210 aa	Known RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	HOXC5	Q00444	222 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	CAP1	Q01518	475 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PIN1	Q13526	163 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	FAM110C	Q1W6H9	321 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	UBE2NL	Q5JXB2	153 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	HLA-DQA1	Q5Y7H0	255 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	PODNL1	Q6PEZ8	512 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	NXPE4	Q6UWF7	544 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	C6orf120	Q7Z4R8	191 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC35F2	Q8IXU6	374 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	GPR135	Q8IZ08	494 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	DENND6B	Q8NEG7	585 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR4F15	Q8NGB8	312 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	TMEM163	Q8TC26	289 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC16A10	Q8TF71	515 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SMPDL3B	Q92485	455 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	EGLN2	Q96KS0	407 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SAMD8	Q96LT4	415 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	COQ10A	Q96MF6	247 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ZNF300	Q96RE9	604 aa	Predicted RBP	4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ATG5	Q9H1Y0	275 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ABCG5	Q9H222	651 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	XKR8	Q9H6D3	395 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	MED20	Q9H944	212 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC25A37	Q9NYZ2	338 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	B4GALT6	Q9UBX8	382 aa		4.74	□□□□□ -1.65
SYNE2-223	ENST00000557005	ELOA3D	A6NLF2	546 aa	Predicted RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	WASH4P	A8MWX3	477 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	LEFTY2	O00292	366 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ARPC1B	O15143	372 aa	Known RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC16A6	O15403	523 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	FRS3	O43559	492 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	AOC2	O75106	756 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ARHGEF15	O94989	841 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	KCNK5	O95279	499 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	F2	P00734	622 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	RLN2	P04090	185 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	IFNA6	P05013	189 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ACPP	P15309	386 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	JUND	P17535	347 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PCMT1	P22061	227 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	F8A1	P23610	371 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	MPI	P34949	423 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	MLLT3	P42568	568 aa	Predicted RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PGF	P49763	221 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ELOA3B	Q3SY89	546 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SLC25A24	Q6NUK1	477 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005		Q6ZSR9	355 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	HIST2H2AB	Q8IUE6	130 aa	Predicted RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	LACC1	Q8IV20	430 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ELOA3	Q8NG57	546 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR2T33	Q8NG76	320 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	OR2AP1	Q8NGE2	309 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	RPLP0P6	Q8NHW5	317 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SYNPR	Q8TBG9	265 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PMM1	Q92871	262 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SCAMP4	Q969E2	229 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	S100A13	Q99584	98 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	ALG8	Q9BVK2	526 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PPA2	Q9H2U2	334 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	FOLH1B	Q9HBA9	442 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	NLGN3	Q9NZ94	848 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	NOP16	Q9Y3C1	178 aa	Known RBP	4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PCDHGB1	Q9Y5G3	927 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	XKRY	O14609	159 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	PCDHGA12	O60330	932 aa		4.73	□□□□□ -1.65
SYNE2-223	ENST00000557005	SCN2B	O60939	215 aa		4.73	□□□□□ -1.65

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