RNA–Protein interactions for RNA: ENST00000555351.1

VRK1-204, Transcript of vaccinia related kinase 1, humanhuman

TSL 2

Gene VRK1, Length 667 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-204ENST00000555351 NUP54Q7Z3B4 507 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 LRRN4CLQ8ND94 238 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 SPPL2AQ8TCT8 520 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 RND1Q92730 232 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 CNRIP1Q96F85 164 aaPredicted RBP10.88□□□□□ -0.67
VRK1-204ENST00000555351 LCORQ96JN0 433 aaPredicted RBP10.88□□□□□ -0.67
VRK1-204ENST00000555351 ZNF597Q96LX8 424 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 SMC6Q96SB8 1091 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 SPOCK3Q9BQ16 436 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 TRMOQ9BU70 441 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 DOHHQ9BU89 302 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 MID1IP1Q9NPA3 183 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 OXSMQ9NWU1 459 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 TAS2R7Q9NYW3 318 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 UTS2RQ9UKP6 389 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 DLGAP4Q9Y2H0 992 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 HRH3Q9Y5N1 445 aa10.88□□□□□ -0.67
VRK1-204ENST00000555351 TRGV5A0A0B4J1U4 118 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 GNG14A0A1W2PPG7 69 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 LRRC3CA6NJW4 275 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 UBFD1O14562 309 aaKnown RBP10.87□□□□□ -0.67
VRK1-204ENST00000555351 COPEO14579 308 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 TO15178 435 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 PPM1BO75688 479 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 PDE9AO76083 593 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 CBX7O95931 251 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 IFI6P09912 130 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 NUDT17P0C025 328 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 COX6B1P14854 86 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 GABRA1P14867 456 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 CPA3P15088 417 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 CHN1P15882 459 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 PRPH2P23942 346 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 ELAVL4P26378 380 aaKnown RBP10.87□□□□□ -0.67
VRK1-204ENST00000555351 ABCD3P28288 659 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 GRNP28799 593 aaKnown RBP10.87□□□□□ -0.67
VRK1-204ENST00000555351 CHRNB4P30926 498 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 MPIP34949 423 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 FEN1P39748 380 aaKnown RBP10.87□□□□□ -0.67
VRK1-204ENST00000555351 HTR6P50406 440 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 NAGLUP54802 743 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 CFAP157Q5JU67 520 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 WLSQ5T9L3 541 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 LIPMQ5VYY2 423 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 IKBIPQ70UQ0 350 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 PACS2Q86VP3 889 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 GSPT2Q8IYD1 628 aaKnown RBP10.87□□□□□ -0.67
VRK1-204ENST00000555351 MARVELD2Q8N4S9 558 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 CCNYL1Q8N7R7 359 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 LILRB4Q8NHJ6 448 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 C16orf78Q8WTQ4 265 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 CA5BP1Q8WTZ4 195 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 SREK1Q8WXA9 508 aaKnown RBP10.87□□□□□ -0.67
VRK1-204ENST00000555351 DIO2Q92813 273 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 TMEM41AQ96HV5 264 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 HBEGFQ99075 208 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 TREX2Q9BQ50 279 aaPredicted RBP10.87□□□□□ -0.67
VRK1-204ENST00000555351 BRINP2Q9C0B6 783 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 ENKD1Q9H0I2 346 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 STMN4Q9H169 189 aaPredicted RBP10.87□□□□□ -0.67
VRK1-204ENST00000555351 GIMAP4Q9NUV9 329 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 HEY2Q9UBP5 337 aa10.87□□□□□ -0.67
VRK1-204ENST00000555351 EML6Q6ZMW3 1958 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 PHF3Q92576 2039 aaKnown RBP10.86□□□□□ -0.67
VRK1-204ENST00000555351 ATP6AP2A0A1C7CYW4 349 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 FRG2CA6NGY1 282 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 NPIPA2E9PIF3 369 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 NPIPA3F8WFD2 350 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 PLOD3O60568 738 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 ATP6AP2O75787 350 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 RSL1D1O76021 490 aaKnown RBP10.86□□□□□ -0.67
VRK1-204ENST00000555351 HPNP05981 417 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 ABCB1P08183 1280 aaPredicted RBP10.86□□□□□ -0.67
VRK1-204ENST00000555351 IL3P08700 152 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 ANXA4P09525 319 aaPredicted RBP10.86□□□□□ -0.67
VRK1-204ENST00000555351 UROSP10746 265 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 KRT4P19013 534 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 DDCP20711 480 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 SOX18P35713 384 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 CASP3P42574 277 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 SLCO1A2P46721 670 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 ALDH9A1P49189 494 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 EMDP50402 254 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 HMGCS1Q01581 520 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 ZNF763Q0D2J5 394 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 SF3B4Q15427 424 aaKnown RBP eCLIP10.86□□□□□ -0.672e-6■■□□□ 13.4
VRK1-204ENST00000555351 ZNF628Q5EBL2 1059 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 PRAMEF20Q5VT98 475 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 SLC30A6Q6NXT4 461 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 FAM111BQ6SJ93 734 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 C3P1Q6ZMU1 363 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 GDF7Q7Z4P5 450 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 MCEMP1Q8IX19 187 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 NEIL3Q8TAT5 605 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 PUM2Q8TB72 1066 aaKnown RBP eCLIP10.86□□□□□ -0.672e-8■■■■□ 25.9
VRK1-204ENST00000555351 DOK4Q8TEW6 326 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 SDCCAG3Q96C92 435 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 DTNBP1Q96EV8 351 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 APIPQ96GX9 242 aa10.86□□□□□ -0.67
VRK1-204ENST00000555351 ZNF764Q96H86 408 aaPredicted RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms