RNA–Protein interactions for RNA: ENST00000545540.5

USP28-214, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2 BASIC

Gene USP28, Length 3,431 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-214ENST00000545540 LSM2Q9Y333 95 aaKnown RBP14.2□□□□□ -0.14
USP28-214ENST00000545540 TBC1D3BA6NDS4 549 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 HRO43593 1189 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 DPM1O60762 260 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 MRPS14O60783 128 aaKnown RBP14.2□□□□□ -0.14
USP28-214ENST00000545540 LALBAP00709 142 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 APEX1P27695 318 aaKnown RBP14.2□□□□□ -0.14
USP28-214ENST00000545540 MAT2AP31153 395 aaKnown RBP14.2□□□□□ -0.14
USP28-214ENST00000545540 KCNJ5P48544 419 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 RORCP51449 518 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 TBRG1Q3YBR2 411 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 PYDC2Q56P42 97 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 SLC30A8Q8IWU4 369 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 OR4N5Q8IXE1 308 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 BBS4Q96RK4 519 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 NELL2Q99435 816 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 CTRCQ99895 268 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 MS4A8Q9BY19 250 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 CAPN10Q9HC96 672 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 SSR3Q9UNL2 185 aa14.2□□□□□ -0.14
USP28-214ENST00000545540 KIAA0355O15063 1070 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 SEMA3DO95025 777 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 TP53P04637 393 aaPredicted RBP14.19□□□□□ -0.14
USP28-214ENST00000545540 TSPAN19P0C672 248 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 HTR3AP46098 478 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 GIPRP48546 466 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 LTB4RQ15722 352 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 CCDC92Q53HC0 331 aaPredicted RBP14.19□□□□□ -0.14
USP28-214ENST00000545540 ZNF517Q6ZMY9 492 aaPredicted RBP14.19□□□□□ -0.14
USP28-214ENST00000545540 LINC00299Q6ZSB3 139 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 ANKRD33Q7Z3H0 272 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 KIF18BQ86Y91 864 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 ZNF354BQ96LW1 612 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 TMEM245Q9H330 911 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 RANGRFQ9HD47 186 aaPredicted RBP14.19□□□□□ -0.14
USP28-214ENST00000545540 FZD3Q9NPG1 666 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 MKLN1Q9UL63 735 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 CLCA3PQ9Y6N3 262 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 LRRK1Q38SD2 2015 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 RB1P06400 928 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 CISD3P0C7P0 127 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 MSL3P1P0C860 447 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 MYOGP15173 224 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 CTNNB1P35222 781 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 GPR4P46093 362 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 HNRNPFP52597 415 aaKnown RBP14.19□□□□□ -0.14
USP28-214ENST00000545540 ILKQ13418 452 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 ZNF791Q3KP31 576 aaPredicted RBP14.19□□□□□ -0.14
USP28-214ENST00000545540 PRICKLE2Q7Z3G6 844 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 BBS1Q8NFJ9 593 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 OR2L2Q8NH16 312 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 OR52P1PQ8NH57 321 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 CXorf40BQ96DE9 158 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 C12orf66Q96MD2 445 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 ZNF221Q9UK13 617 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 ATG4BQ9Y4P1 393 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 FABP12A6NFH5 140 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 ERI3O43414 337 aaKnown RBP14.19□□□□□ -0.14
USP28-214ENST00000545540 FKTNO75072 461 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 ADAP00813 363 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 PXNP49023 591 aaPredicted RBP14.19□□□□□ -0.14
USP28-214ENST00000545540 MNX1P50219 401 aaPredicted RBP14.19□□□□□ -0.14
USP28-214ENST00000545540 ZNF234Q14588 700 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 TIMM50Q3ZCQ8 353 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 PIP5KL1Q5T9C9 394 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 PDZD3Q86UT5 571 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 OR6F1Q8NGZ6 308 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 OR5P2Q8WZ92 322 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 PAWRQ96IZ0 340 aaKnown RBP14.19□□□□□ -0.14
USP28-214ENST00000545540 SLC35G5Q96KT7 338 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 AIF1LQ9BQI0 150 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 TTTY10Q9BZA0 68 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 MIXL1Q9H2W2 232 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 KCND3Q9UK17 655 aa14.19□□□□□ -0.14
USP28-214ENST00000545540 SMLR1H3BR10 107 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 NDUFS4O43181 175 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 FCMRO60667 390 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 ZNF33BQ06732 778 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 KRT33BQ14525 404 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 LARS2Q15031 903 aaKnown RBP14.18□□□□□ -0.14
USP28-214ENST00000545540 SLX4IPQ5VYV7 408 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 UNC5DQ6UXZ4 953 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 NANOGP1Q8N7R0 232 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 ATP6V1C2Q8NEY4 427 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 OR8D4Q8NGM9 314 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 ZNF582Q96NG8 517 aaPredicted RBP14.18□□□□□ -0.14
USP28-214ENST00000545540 C11orf54Q9H0W9 315 aaPredicted RBP14.18□□□□□ -0.14
USP28-214ENST00000545540 MAN2C1Q9NTJ4 1040 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 PAQR5Q9NXK6 330 aaPredicted RBP14.18□□□□□ -0.14
USP28-214ENST00000545540 SERGEFQ9UGK8 458 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 NOX1Q9Y5S8 564 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 CACNA1CQ13936 2221 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 ID2Q02363 134 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 P2RY14Q15391 338 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 TUBA3EQ6PEY2 450 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 SMARCD3Q6STE5 483 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 TMEFF1Q8IYR6 380 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 GHDCQ8N2G8 530 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 TMEM145Q8NBT3 493 aa14.18□□□□□ -0.14
USP28-214ENST00000545540 OR8J1Q8NGP2 316 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 45.3 ms