RNA–Protein interactions for RNA: ENST00000544550.5

SNHG1-220, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 2

Gene SNHG1, Length 636 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-220ENST00000544550 LDB1Q86U70 411 aaPredicted RBP3.71□□□□□ -1.82
SNHG1-220ENST00000544550 LRRC6Q86X45 466 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 PDSS2Q86YH6 399 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 CMTM4Q8IZR5 234 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 TMEM132CQ8N3T6 1108 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 TBC1D19Q8N5T2 526 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 ANKRD53Q8N9V6 530 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 C9orf106Q8NAJ2 232 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 C7orf57Q8NEG2 295 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 OR5T3Q8NGG3 340 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 OR14K1Q8NGZ2 314 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 GABPB2Q8TAK5 448 aaPredicted RBP3.71□□□□□ -1.82
SNHG1-220ENST00000544550 SLC22A8Q8TCC7 542 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 PAQR8Q8TEZ7 354 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 ZFAND2BQ8WV99 257 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 SLC13A3Q8WWT9 602 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 CTNNBL1Q8WYA6 563 aaPredicted RBP3.71□□□□□ -1.82
SNHG1-220ENST00000544550 DAZLQ92904 295 aaKnown RBP3.71□□□□□ -1.82
SNHG1-220ENST00000544550 RGMAQ96B86 450 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 REPS1Q96D71 796 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 TM4SF19Q96DZ7 209 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 ZNF597Q96LX8 424 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 JSRP1Q96MG2 331 aaPredicted RBP3.71□□□□□ -1.82
SNHG1-220ENST00000544550 HS6ST2Q96MM7 605 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 PRAP1Q96NZ9 151 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 FAM111AQ96PZ2 611 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 TNFRSF13CQ96RJ3 184 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 GPHA2Q96T91 129 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 PCBD2Q9H0N5 130 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 SLCO5A1Q9H2Y9 848 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 C12orf65Q9H3J6 166 aaKnown RBP3.71□□□□□ -1.82
SNHG1-220ENST00000544550 LRRC40Q9H9A6 602 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 ADAP2Q9NPF8 381 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 PNO1Q9NRX1 252 aaKnown RBP3.71□□□□□ -1.82
SNHG1-220ENST00000544550 TRMT1Q9NXH9 659 aaKnown RBP3.71□□□□□ -1.82
SNHG1-220ENST00000544550 CNIH4Q9P003 139 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 ZNF223Q9UK11 482 aaPredicted RBP3.71□□□□□ -1.82
SNHG1-220ENST00000544550 KCNS2Q9ULS6 477 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 LAMP3Q9UQV4 416 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP3.71□□□□□ -1.82
SNHG1-220ENST00000544550 IKBKGQ9Y6K9 419 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 GTF3C1Q12789 2109 aa3.71□□□□□ -1.82
SNHG1-220ENST00000544550 PHF3Q92576 2039 aaKnown RBP3.7□□□□□ -1.82
SNHG1-220ENST00000544550 SPTBP11277 2137 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 A0A088AWK7 358 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 CCDC162PA2VCL2 907 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 OR51F1A6NGY5 319 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 ZNF860A6NHJ4 632 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 LRRC14BA6NHZ5 514 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 KDM4EB2RXH2 506 aaPredicted RBP3.7□□□□□ -1.82
SNHG1-220ENST00000544550 E7ENX8 843 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 SLCO1B7G3V0H7 640 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 H3BMM5 538 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 C16orf97H3BN30 126 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 OVOL3O00110 214 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 PFDN6O15212 129 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 NDUFS4O43181 175 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 CEP104O60308 925 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 PSIP1O75475 530 aaKnown RBP3.7□□□□□ -1.82
SNHG1-220ENST00000544550 TRAPPC6AO75865 159 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 SLC16A8O95907 504 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 ACTL6AO96019 429 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 GOT2P00505 430 aaKnown RBP3.7□□□□□ -1.82
SNHG1-220ENST00000544550 C1QAP02745 245 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 HPNP05981 417 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 RFPL3SP0C7P2 107 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 CCL3P10147 92 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 CREB1P16220 341 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 SLC25A16P16260 332 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 PECAM1P16284 738 aaPredicted RBP3.7□□□□□ -1.82
SNHG1-220ENST00000544550 RHCEP18577 417 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 RPS3P23396 243 aaKnown RBP eCLIP3.7□□□□□ -1.82
SNHG1-220ENST00000544550 PSMB4P28070 264 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 RBL1P28749 1068 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 UGT2B10P36537 528 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 ACVR1BP36896 505 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 PIGAP37287 484 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 SLC1A1P43005 524 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 KCNJ5P48544 419 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 KCNC1P48547 511 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 TRPC1P48995 793 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 COMPP49747 757 aaPredicted RBP3.7□□□□□ -1.82
SNHG1-220ENST00000544550 CDK9P50750 372 aaKnown RBP3.7□□□□□ -1.82
SNHG1-220ENST00000544550 HSD17B7P56937 341 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 PRAMEP78395 509 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 BTG2P78543 158 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 DEFA6Q01524 100 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 FAM27E3Q08E93 113 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 RCN2Q14257 317 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 FGFBP1Q14512 234 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 POU6F1Q14863 301 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 RAB39AQ14964 217 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 RPS6KA1Q15418 735 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 ELAVL1Q15717 326 aaKnown RBP3.7□□□□□ -1.82
SNHG1-220ENST00000544550 NRF1Q16656 503 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 MPEG1Q2M385 716 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 FAM174BQ3ZCQ3 159 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 DEFB134Q4QY38 66 aa3.7□□□□□ -1.82
SNHG1-220ENST00000544550 EEF1AKMT2Q5JPI9 291 aaKnown RBP3.7□□□□□ -1.82
SNHG1-220ENST00000544550 HIST2H2BDQ6DRA6 164 aa3.7□□□□□ -1.82
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms