RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 MED4Q9NPJ6 270 aa6.65□□□□□ -1.34
YBX3-209ENST00000540747 PPANQ9NQ55 473 aaKnown RBP6.65□□□□□ -1.34
YBX3-209ENST00000540747 SNX15Q9NRS6 342 aa6.65□□□□□ -1.34
YBX3-209ENST00000540747 TEX10Q9NXF1 929 aaPredicted RBP6.65□□□□□ -1.34
YBX3-209ENST00000540747 PSD3Q9NYI0 1048 aa6.65□□□□□ -1.34
YBX3-209ENST00000540747 PHF11Q9UIL8 331 aa6.65□□□□□ -1.34
YBX3-209ENST00000540747 CAMK2AQ9UQM7 478 aa6.65□□□□□ -1.34
YBX3-209ENST00000540747 MTO1Q9Y2Z2 717 aaKnown RBP6.65□□□□□ -1.34
YBX3-209ENST00000540747 SPACA6W5XKT8 324 aa6.65□□□□□ -1.34
YBX3-209ENST00000540747 MED12LQ86YW9 2145 aa6.65□□□□□ -1.35
YBX3-209ENST00000540747 IQANK1A0A1B0GTG1 560 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 TRIM64A6NGJ6 449 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 TRIM64BA6NI03 449 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 A8MXE2 369 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 B4DXG7 233 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 INAFM1C9JVW0 142 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 SAP18O00422 153 aaKnown RBP6.64□□□□□ -1.35
YBX3-209ENST00000540747 CES2O00748 559 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 SNPHO15079 494 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 PHGDHO43175 533 aaKnown RBP6.64□□□□□ -1.35
YBX3-209ENST00000540747 DYRK3O43781 588 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 SH3BGRLO75368 114 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 ERN1O75460 977 aaKnown RBP6.64□□□□□ -1.35
YBX3-209ENST00000540747 TRAPPC6AO75865 159 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 AIFM1O95831 613 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 ACTL6AO96019 429 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 ABCB1P08183 1280 aaPredicted RBP6.64□□□□□ -1.35
YBX3-209ENST00000540747 CT62P0C5K7 136 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 PAX1P15863 534 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 GPX3P22352 226 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 ABCD3P28288 659 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 PCSK6P29122 969 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 PIK3CBP42338 1070 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 GFRA1P56159 465 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 ATP6V0D1P61421 351 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 C2orf54Q08AI8 447 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 ILF2Q12905 390 aaKnown RBP6.64□□□□□ -1.35
YBX3-209ENST00000540747 CAPRIN1Q14444 709 aaKnown RBP6.64□□□□□ -1.35
YBX3-209ENST00000540747 PPP1R7Q15435 360 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 GLE1Q53GS7 698 aaKnown RBP6.64□□□□□ -1.35
YBX3-209ENST00000540747 FBXW10Q5XX13 1052 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 GRHL2Q6ISB3 625 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 MED27Q6P2C8 311 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 PLXDC2Q6UX71 529 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 VWA5B2Q8N398 1253 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 SNX31Q8N9S9 440 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 HUS1BQ8NHY5 278 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 RNF138Q8WVD3 245 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 RIT1Q92963 219 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 WNT2BQ93097 391 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 UCN3Q969E3 161 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 UBE2E3Q969T4 207 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 RGMAQ96B86 450 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 Q96MF0 132 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 ATOH8Q96SQ7 321 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 GPR22Q99680 433 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 TM9SF2Q99805 663 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 GSX2Q9BZM3 304 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 CD244Q9BZW8 370 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 DDX47Q9H0S4 455 aaKnown RBP6.64□□□□□ -1.35
YBX3-209ENST00000540747 PIGMQ9H3S5 423 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 CAB39LQ9H9S4 337 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 ASIC3Q9UHC3 531 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 TRPS1Q9UHF7 1281 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 DTX4Q9Y2E6 619 aa6.64□□□□□ -1.35
YBX3-209ENST00000540747 GOLGA6L10A0A0M3HER8 536 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 C2orf92A0A1B0GVN3 265 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 A0A1W2PNV4 684 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 GLOD5A6NK44 160 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 CAPN14A8MX76 684 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 CXorf49A8MYA2 514 aaPredicted RBP6.63□□□□□ -1.35
YBX3-209ENST00000540747 H3BQF6 201 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 MSTNO14793 375 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 PGRMC2O15173 223 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 OR10H2O60403 315 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 CCNT2O60583 730 aaKnown RBP6.63□□□□□ -1.35
YBX3-209ENST00000540747 SMPD2O60906 423 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 CDH16O75309 829 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 PIAS1O75925 651 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 SOX30O94993 753 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 ABCA1O95477 2261 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 CCDC166P0CW27 439 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 NR2F6P10588 404 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 CYP4B1P13584 511 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 MTHFD2P13995 350 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 NAGAP17050 411 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 CRYGSP22914 178 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 TLX1P31314 330 aaPredicted RBP6.63□□□□□ -1.35
YBX3-209ENST00000540747 GMPRP36959 345 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 BUD31P41223 144 aaPredicted RBP6.63□□□□□ -1.35
YBX3-209ENST00000540747 MC3RP41968 323 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 TMED10P49755 219 aaKnown RBP6.63□□□□□ -1.35
YBX3-209ENST00000540747 LHX2P50458 406 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 CLDN18P56856 261 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 MGAT2Q10469 447 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 DLG1Q12959 904 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 RCAN2Q14206 197 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 ACKR1Q16570 336 aa6.63□□□□□ -1.35
YBX3-209ENST00000540747 HIST2H2ACQ16777 129 aaPredicted RBP6.63□□□□□ -1.35
YBX3-209ENST00000540747 HIST2H2AA3Q6FI13 130 aa6.63□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms