RNA–Protein interactions for RNA: ENST00000524356.1

PCM1-223, Transcript of pericentriolar material 1, human

TSL 2

Gene PCM1, Length 577 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PCM1-223	ENST00000524356	NR2C2	P49116	596 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	SLC11A1	P49279	550 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	ACADVL	P49748	655 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	TAF6	P49848	677 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	ENTPD1	P49961	510 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	NLRP11	P59045	1033 aa	Known RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	CD81	P60033	236 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	CSNK2A1	P68400	391 aa	Predicted RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	CBX1	P83916	185 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	GAGE2B	Q13066	116 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	DNAJC3	Q13217	504 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	GAGE2E	Q4V326	116 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	CMPK2	Q5EBM0	449 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	GRTP1	Q5TC63	336 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	LIN9	Q5TKA1	542 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	ATF7IP2	Q5U623	682 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	TTC23	Q5W5X9	447 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	FRG2	Q64ET8	278 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	C18orf63	Q68DL7	685 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	GAGE2A	Q6NT46	116 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	DUS1L	Q6P1R4	473 aa	Known RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	CBLN3	Q6UW01	205 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	PLXDC2	Q6UX71	529 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	CXCL17	Q6UXB2	119 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	ASCL5	Q7RTU5	278 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	DEFB128	Q7Z7B8	93 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	AMIGO1	Q86WK6	493 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	CDR2L	Q86X02	465 aa	Predicted RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	CROCCP3	Q8IVE0	287 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	FOXRED2	Q8IWF2	684 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	MB21D2	Q8IYB1	491 aa	Predicted RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	UBQLNL	Q8IYU4	475 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	THEM5	Q8N1Q8	247 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	UBE2J2	Q8N2K1	259 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	TMEM199	Q8N511	208 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	SLC25A41	Q8N5S1	370 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	PCDH20	Q8N6Y1	951 aa	Known RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	LRRC17	Q8N6Y2	441 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	LINC00469	Q8N7U9	141 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	SMYD1	Q8NB12	490 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	CSNK2A3	Q8NEV1	391 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	ZNF397	Q8NF99	534 aa	Predicted RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	OR2AK2	Q8NG84	335 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	SMPDL3B	Q92485	455 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	NCLN	Q969V3	563 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	ISG20	Q96AZ6	181 aa	Known RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	TMEM18	Q96B42	140 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	EFHD2	Q96C19	240 aa	Predicted RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	ULK4	Q96C45	1275 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	NPY6R	Q99463	290 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	NUP58	Q9BVL2	599 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	TRMT61B	Q9BVS5	477 aa	Known RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	SEMA6A	Q9H2E6	1030 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	UBE2Z	Q9H832	354 aa	Predicted RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	COG4	Q9H9E3	785 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	KCNK13	Q9HB14	408 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	MOV10	Q9HCE1	1003 aa	Known RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	APMAP	Q9HDC9	416 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	AGPAT3	Q9NRZ7	376 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	QPCTL	Q9NXS2	382 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	NPAP1	Q9NZP6	1156 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	RCC2	Q9P258	522 aa	Known RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	GAGE2D	Q9UEU5	116 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	B9D1	Q9UPM9	204 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	PLCL2	Q9UPR0	1127 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	RUVBL2	Q9Y230	463 aa	Known RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	WDR83OS	Q9Y284	106 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	UCHL5	Q9Y5K5	329 aa	Known RBP eCLIP	3.91	□□□□□ -1.78	1e-10	■■■□□ 18.1
PCM1-223	ENST00000524356	DYNC1LI1	Q9Y6G9	523 aa	Known RBP	3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	WDR87	Q6ZQQ6	2873 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	IL16	Q14005	1332 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	FRMPD3	Q5JV73	1810 aa		3.91	□□□□□ -1.78
PCM1-223	ENST00000524356	CFAP47	Q6ZTR5	3102 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	LOC285556	D6RIA3	1793 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	FAM240B	A0A1B0GVZ2	78 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	OR2M5	A3KFT3	312 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	CASTOR2	A6NHX0	329 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	VGLL3	A8MV65	326 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	BECN2	A8MW95	431 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	WASH3P	C4AMC7	463 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	HSBP1L1	C9JCN9	74 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	RHOD	O00212	210 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	SDHD	O14521	159 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	ALOX15B	O15296	676 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	YKT6	O15498	198 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	TLX3	O43711	291 aa	Predicted RBP	3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	LDB3	O75112	727 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	NEBL	O76041	1014 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	PIGN	O95427	931 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	PLAU	P00749	431 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	S100A6	P06703	90 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	CAPN1	P07384	714 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	GNS	P15586	552 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	UGT1A1	P22309	533 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	DGKA	P23743	735 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	SSTR1	P30872	391 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	TNFSF8	P32971	234 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	GRIA1	P42261	906 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	MAGEA11	P43364	429 aa		3.9	□□□□□ -1.79
PCM1-223	ENST00000524356	SYK	P43405	635 aa		3.9	□□□□□ -1.79

Retrieved 100 of 20,778 RNA–protein pairs in 34.8 ms