RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CCNYL1Q8N7R7 359 aa12.55□□□□□ -0.4
TCOF1-215ENST00000515516 NEIL3Q8TAT5 605 aa12.55□□□□□ -0.4
TCOF1-215ENST00000515516 L3HYPDHQ96EM0 354 aa12.55□□□□□ -0.4
TCOF1-215ENST00000515516 LURAP1Q96LR2 239 aa12.55□□□□□ -0.4
TCOF1-215ENST00000515516 RILPQ96NA2 401 aa12.55□□□□□ -0.4
TCOF1-215ENST00000515516 TTYH2Q9BSA4 534 aa12.55□□□□□ -0.4
TCOF1-215ENST00000515516 UCK2Q9BZX2 261 aa12.55□□□□□ -0.4
TCOF1-215ENST00000515516 ENKD1Q9H0I2 346 aa12.55□□□□□ -0.4
TCOF1-215ENST00000515516 ZNF225Q9UK10 706 aa12.55□□□□□ -0.4
TCOF1-215ENST00000515516 CENPEQ02224 2701 aa12.55□□□□□ -0.4
TCOF1-215ENST00000515516 C15orf38-AP3S2A0A0A6YYH1 394 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 NKX2-6A6NCS4 301 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 LRRC3CA6NJW4 275 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 ACOX3O15254 700 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 GLRA3O75311 464 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 TRIM3O75382 744 aaPredicted RBP12.54□□□□□ -0.4
TCOF1-215ENST00000515516 GLI4P10075 376 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 MYL2P10916 166 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 DRD2P14416 443 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 NAGAP17050 411 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 GPX3P22352 226 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 ELAVL4P26378 380 aaKnown RBP12.54□□□□□ -0.4
TCOF1-215ENST00000515516 ABCD3P28288 659 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 ZFP36L2P47974 494 aaKnown RBP12.54□□□□□ -0.4
TCOF1-215ENST00000515516 CCT5P48643 541 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 TRPC1P48995 793 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 NAA20P61599 178 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 DCAF7P61962 342 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 BTKQ06187 659 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 HEPACAMQ14CZ8 416 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 EXOSC7Q15024 291 aaKnown RBP12.54□□□□□ -0.4
TCOF1-215ENST00000515516 SF3B4Q15427 424 aaKnown RBP eCLIP12.54□□□□□ -0.49e-7■■■■□ 20
TCOF1-215ENST00000515516 IMPG1Q17R60 797 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 CFAP157Q5JU67 520 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 SPDYAQ5MJ70 313 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 FAM111BQ6SJ93 734 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 NUP54Q7Z3B4 507 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 ZNF295-AS1Q8N0V1 137 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 MMP21Q8N119 569 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 ADCY4Q8NFM4 1077 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 OR52R1Q8NGF1 315 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 UBLCP1Q8WVY7 318 aaPredicted RBP12.54□□□□□ -0.4
TCOF1-215ENST00000515516 HSPBAP1Q96EW2 488 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 C14orf79Q96F83 325 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 LCORQ96JN0 433 aaPredicted RBP12.54□□□□□ -0.4
TCOF1-215ENST00000515516 ANGPTL4Q9BY76 406 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 NXF5Q9H1B4 397 aaKnown RBP12.54□□□□□ -0.4
TCOF1-215ENST00000515516 SLC6A15Q9H2J7 730 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 METTL7AQ9H8H3 244 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 PROK2Q9HC23 129 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 MID1IP1Q9NPA3 183 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 MAT2BQ9NZL9 334 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 SPRR3Q9UBC9 169 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 DLGAP4Q9Y2H0 992 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 PCDHGB3Q9Y5G1 929 aa12.54□□□□□ -0.4
TCOF1-215ENST00000515516 CELSR2Q9HCU4 2923 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 H3BQF6 201 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 PPM1BO75688 479 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 ABCB1P08183 1280 aaPredicted RBP12.53□□□□□ -0.4
TCOF1-215ENST00000515516 IL3P08700 152 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 CHN1P15882 459 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 S1PR1P21453 382 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 GCKP35557 465 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 CASP3P42574 277 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 GSTM5P46439 218 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 HMGCS1Q01581 520 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 TLE4Q04727 773 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 PLCXD2Q0VAA5 305 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 NNATQ16517 81 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 ERCC6LQ2NKX8 1250 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 CCDC153Q494R4 210 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 CCDC116Q8IYX3 515 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 CLYBLQ8N0X4 340 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 EIF1ADQ8N9N8 165 aaKnown RBP12.53□□□□□ -0.4
TCOF1-215ENST00000515516 CCDC63Q8NA47 563 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 CNRIP1Q96F85 164 aaPredicted RBP12.53□□□□□ -0.4
TCOF1-215ENST00000515516 ITPAQ9BY32 194 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 TXLNGYQ9BZA5 131 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 ACPTQ9BZG2 426 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 PPCSQ9HAB8 311 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 SLC24A3Q9HC58 644 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 SENP1Q9P0U3 644 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 ZNF639Q9UID6 485 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 PLLPQ9Y342 182 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 TIMM22Q9Y584 194 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 CACNA1DQ01668 2161 aa12.53□□□□□ -0.4
TCOF1-215ENST00000515516 A0A1W2PPM1 405 aa12.52□□□□□ -0.41
TCOF1-215ENST00000515516 AHRRA9YTQ3 701 aa12.52□□□□□ -0.41
TCOF1-215ENST00000515516 TOXO94900 526 aa12.52□□□□□ -0.41
TCOF1-215ENST00000515516 ANXA4P09525 319 aaPredicted RBP12.52□□□□□ -0.41
TCOF1-215ENST00000515516 PCSK2P16519 638 aa12.52□□□□□ -0.41
TCOF1-215ENST00000515516 CAPN3P20807 821 aa12.52□□□□□ -0.41
TCOF1-215ENST00000515516 ENDOUP21128 410 aaKnown RBP12.52□□□□□ -0.41
TCOF1-215ENST00000515516 DRD5P21918 477 aa12.52□□□□□ -0.41
TCOF1-215ENST00000515516 TIA1P31483 386 aaKnown RBP eCLIP12.52□□□□□ -0.41
TCOF1-215ENST00000515516 MPIP34949 423 aa12.52□□□□□ -0.41
TCOF1-215ENST00000515516 KRT20P35900 424 aa12.52□□□□□ -0.41
TCOF1-215ENST00000515516 PPICP45877 212 aa12.52□□□□□ -0.41
TCOF1-215ENST00000515516 CDK9P50750 372 aaKnown RBP12.52□□□□□ -0.41
TCOF1-215ENST00000515516 MGAT2Q10469 447 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms