RNA–Protein interactions for RNA: ENST00000514665.1

USP53-209, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,233 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-209ENST00000514665 RNGTTO60942 597 aaKnown RBP12.05□□□□□ -0.48
USP53-209ENST00000514665 EPCAMP16422 314 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 AK4P27144 223 aaPredicted RBP12.05□□□□□ -0.48
USP53-209ENST00000514665 SGSHP51688 502 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 NRG3P56975 720 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 TUBB3Q13509 450 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 LIPIQ6XZB0 460 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 ZNF761Q86XN6 746 aaPredicted RBP12.05□□□□□ -0.48
USP53-209ENST00000514665 IQCF2Q8IXL9 164 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 B3GNT7Q8NFL0 401 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 LMX1AQ8TE12 382 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 SLC6A16Q9GZN6 736 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 TUBB1Q9H4B7 451 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 GRHPRQ9UBQ7 328 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 LAMP5Q9UJQ1 280 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 STUB1Q9UNE7 303 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 PLCH1Q4KWH8 1693 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 KRBA1A5PL33 1030 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 ANTXRLA6NF34 631 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 SOBPA7XYQ1 873 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 HCRTR2O43614 444 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 RBMXL2O75526 392 aaKnown RBP12.05□□□□□ -0.48
USP53-209ENST00000514665 AHSA1O95433 338 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 ADH1BP00325 375 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 AOAHP28039 575 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 ADH7P40394 386 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 SPCS2Q15005 226 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 CST6Q15828 149 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 SMU1Q2TAY7 513 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 CDKL4Q5MAI5 379 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 ARHGAP40Q5TG30 622 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 BORAQ6PGQ7 559 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 FOXRED2Q8IWF2 684 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 SLC39A11Q8N1S5 342 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 ZNF548Q8NEK5 533 aaPredicted RBP12.05□□□□□ -0.48
USP53-209ENST00000514665 MOAP1Q96BY2 351 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 WDR92Q96MX6 357 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 EPYCQ99645 322 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 ST6GALNAC1Q9NSC7 600 aaPredicted RBP12.05□□□□□ -0.48
USP53-209ENST00000514665 RDH8Q9NYR8 311 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 NME7Q9Y5B8 376 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 SEC16AO15027 2179 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 WRBO00258 174 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 IFNA7P01567 189 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 ZNF20P17024 532 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 ARRB2P32121 409 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 CBX5P45973 191 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 CEBPGP53567 150 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 TAS2R43P59537 309 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 ARPC4P59998 168 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 HBA1P69905 142 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 TMEM173Q86WV6 379 aaPredicted RBP12.05□□□□□ -0.48
USP53-209ENST00000514665 GPR78Q96P69 363 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 CST11Q9H112 138 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 DMRT3Q9NQL9 472 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 PCDHGA2Q9Y5H1 932 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 SLX4Q8IY92 1834 aa12.05□□□□□ -0.48
USP53-209ENST00000514665 UNC119BA6NIH7 251 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 CCDC85CA6NKD9 419 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 NOTOA8MTQ0 251 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 OR7A17O14581 309 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 TPD52L2O43399 206 aaKnown RBP12.04□□□□□ -0.48
USP53-209ENST00000514665 OXSR1O95747 527 aaPredicted RBP12.04□□□□□ -0.48
USP53-209ENST00000514665 HMGN2P05204 90 aaKnown RBP12.04□□□□□ -0.48
USP53-209ENST00000514665 PCGF2P35227 344 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 SLC29A4Q7RTT9 530 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 LINC01465Q8N7H1 131 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 NR4A3Q92570 626 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 TRPV4Q9HBA0 871 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 TMEM45AQ9NWC5 275 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 MRPL15Q9P015 296 aaKnown RBP12.04□□□□□ -0.48
USP53-209ENST00000514665 ANKMY1Q9P2S6 941 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 ZNF639Q9UID6 485 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 MRPS17Q9Y2R5 130 aaKnown RBP12.04□□□□□ -0.48
USP53-209ENST00000514665 CSNK1G3Q9Y6M4 447 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 SH3D21A4FU49 640 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 LRRN3E7EW58 273 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 ZNF701M0R085 212 aaPredicted RBP12.04□□□□□ -0.48
USP53-209ENST00000514665 PCSK6P29122 969 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 SSTR4P31391 388 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 FRMPD2BQ6IN97 320 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 OR8S1Q8NH09 359 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 KLHDC7BQ96G42 594 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 SLC6A15Q9H2J7 730 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 LRRN3Q9H3W5 708 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 PRTFDC1Q9NRG1 225 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 TRBV2A0A0J9YWF9 115 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 ZNF726A6NNF4 738 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 PCDH17O14917 1159 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 UGDHO60701 494 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 MTHFD2P13995 350 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 GGT2P36268 569 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 LEXMQ3ZCV2 418 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 TMEM35AQ53FP2 167 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 HSD17B12Q53GQ0 312 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 OTUD1Q5VV17 481 aaPredicted RBP12.04□□□□□ -0.48
USP53-209ENST00000514665 SBSNQ6UWP8 590 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 DCDC5Q6ZRR9 648 aa12.04□□□□□ -0.48
USP53-209ENST00000514665 WDR53Q7Z5U6 358 aaPredicted RBP12.04□□□□□ -0.48
USP53-209ENST00000514665 GALNT7Q86SF2 657 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms