RNA–Protein interactions for RNA: ENST00000494518.1

SKA1-205, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 2

Gene SKA1, Length 746 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-205ENST00000494518 BRINP2Q9C0B6 783 aa11.55□□□□□ -0.56
SKA1-205ENST00000494518 PRDM14Q9GZV8 571 aa11.55□□□□□ -0.56
SKA1-205ENST00000494518 NXF5Q9H1B4 397 aaKnown RBP11.55□□□□□ -0.56
SKA1-205ENST00000494518 VPS11Q9H270 941 aa11.55□□□□□ -0.56
SKA1-205ENST00000494518 UBQLN3Q9H347 655 aa11.55□□□□□ -0.56
SKA1-205ENST00000494518 NOL11Q9H8H0 719 aaKnown RBP11.55□□□□□ -0.56
SKA1-205ENST00000494518 METTL7AQ9H8H3 244 aa11.55□□□□□ -0.56
SKA1-205ENST00000494518 RNF14Q9UBS8 474 aa11.55□□□□□ -0.56
SKA1-205ENST00000494518 TSC22D4Q9Y3Q8 395 aa11.55□□□□□ -0.56
SKA1-205ENST00000494518 PCDHGB3Q9Y5G1 929 aa11.55□□□□□ -0.56
SKA1-205ENST00000494518 HEATR5AQ86XA9 2040 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 ESYT3A0FGR9 886 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 FAM221AA4D161 298 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 ANKRD33BA6NCL7 494 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 TUBAL3A6NHL2 446 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 OR7A17O14581 309 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 CLDN9O95484 217 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 GPX3P22352 226 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 TCEA1P23193 301 aaKnown RBP11.54□□□□□ -0.56
SKA1-205ENST00000494518 CNTFP26441 200 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 ABCD3P28288 659 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 GALNSP34059 522 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 TIMP3P35625 211 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 CCNG1P51959 295 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 NAGLUP54802 743 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 NRG3P56975 720 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 FUT7Q11130 342 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 PCBP2Q15366 365 aaKnown RBP eCLIP11.54□□□□□ -0.56
SKA1-205ENST00000494518 KRTAP21-3Q3LHN1 58 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 NSUN5P2Q63ZY6 315 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 TTC19Q6DKK2 380 aaPredicted RBP11.54□□□□□ -0.56
SKA1-205ENST00000494518 VASNQ6EMK4 673 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 FAM180BQ6P0A1 224 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 PAMR1Q6UXH9 720 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 Q71RC1 249 aaPredicted RBP11.54□□□□□ -0.56
SKA1-205ENST00000494518 RPS27LQ71UM5 84 aaKnown RBP11.54□□□□□ -0.56
SKA1-205ENST00000494518 PM20D2Q8IYS1 436 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 L3MBTL4Q8NA19 623 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 C9orf106Q8NAJ2 232 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 SIMC1Q8NDZ2 872 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 FAM83FQ8NEG4 500 aaPredicted RBP11.54□□□□□ -0.56
SKA1-205ENST00000494518 OR4K14Q8NGD5 310 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 RDH11Q8TC12 318 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 ABTB1Q969K4 478 aaPredicted RBP11.54□□□□□ -0.56
SKA1-205ENST00000494518 TP53INP1Q96A56 240 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 PHF21BQ96EK2 531 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 WDYHV1Q96HA8 205 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 NSUN5Q96P11 429 aaKnown RBP11.54□□□□□ -0.56
SKA1-205ENST00000494518 NODALQ96S42 347 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 SERPINI1Q99574 410 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 ITPAQ9BY32 194 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 GALNT9Q9HCQ5 603 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 SERHLQ9NQF3 203 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 BCAP29Q9UHQ4 241 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 MAPRE3Q9UPY8 281 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 UTP11Q9Y3A2 253 aaKnown RBP11.54□□□□□ -0.56
SKA1-205ENST00000494518 ROS1P08922 2347 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 ABCA2Q9BZC7 2435 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 DNHD1Q96M86 4753 aa11.54□□□□□ -0.56
SKA1-205ENST00000494518 JMJD1CQ15652 2540 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 FOXE1O00358 373 aaPredicted RBP11.53□□□□□ -0.56
SKA1-205ENST00000494518 UGDHO60701 494 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 ERAL1O75616 437 aaKnown RBP11.53□□□□□ -0.56
SKA1-205ENST00000494518 KLHL2O95198 593 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 SNX4O95219 450 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 ABCB1P08183 1280 aaPredicted RBP11.53□□□□□ -0.56
SKA1-205ENST00000494518 CPMP14384 443 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 TSPAN8P19075 237 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 PTPN6P29350 595 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 TYK2P29597 1187 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 FEN1P39748 380 aaKnown RBP11.53□□□□□ -0.56
SKA1-205ENST00000494518 SLCO1A2P46721 670 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 TMED10P49755 219 aaKnown RBP11.53□□□□□ -0.56
SKA1-205ENST00000494518 ARFIP1P53367 373 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 ADAM8P78325 824 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 SLC7A5Q01650 507 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 SRYQ05066 204 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 DUSP2Q05923 314 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 FOXF2Q12947 444 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 NAB1Q13506 487 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 ACAP2Q15057 778 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 FBXL19-AS1Q494R0 122 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 TECRLQ5HYJ1 363 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 CCNYL2Q5T2Q4 361 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 DMRTA1Q5VZB9 504 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 TIGD3Q6B0B8 471 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 KLC3Q6P597 504 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 LUZP2Q86TE4 346 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 ADCY4Q8NFM4 1077 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 OR1J4Q8NGS1 313 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 GPR78Q96P69 363 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 SMR3AQ99954 134 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 KLRF1Q9NZS2 232 aa11.53□□□□□ -0.56
SKA1-205ENST00000494518 ZNF629Q9UEG4 869 aaPredicted RBP11.53□□□□□ -0.56
SKA1-205ENST00000494518 MBD3L4A6NDZ8 208 aaPredicted RBP11.52□□□□□ -0.57
SKA1-205ENST00000494518 MBD3L3A6NE82 208 aaPredicted RBP11.52□□□□□ -0.57
SKA1-205ENST00000494518 MBD3L5A6NJ08 208 aaPredicted RBP11.52□□□□□ -0.57
SKA1-205ENST00000494518 CD8B2A6NJW9 211 aa11.52□□□□□ -0.57
SKA1-205ENST00000494518 NME6O75414 186 aaPredicted RBP11.52□□□□□ -0.57
SKA1-205ENST00000494518 PPM1BO75688 479 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms