RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 C18orf12Q96KH6 178 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 PPP1R36Q96LQ0 422 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 RUNDC3BQ96NL0 473 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ANKRD27Q96NW4 1050 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 VPS35Q96QK1 796 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SECISBP2Q96T21 854 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 KRT12Q99456 494 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 RBM4BQ9BQ04 359 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 C19orf43Q9BQ61 176 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CCDC77Q9BR77 488 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 GPATCH1Q9BRR8 931 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 RIOK1Q9BRS2 568 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 LLPHQ9BRT6 129 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 CABLES2Q9BTV7 478 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 EDEM3Q9BZQ6 932 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 OR2B2Q9GZK3 357 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 FAM192AQ9GZU8 254 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 VCXQ9H320 206 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 DCTPP1Q9H773 170 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 C12orf10Q9HB07 376 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 LY9Q9HBG7 655 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 SPHK2Q9NRA0 654 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 PANK4Q9NVE7 773 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 FAIMQ9NVQ4 179 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 MRPL39Q9NYK5 338 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 ERAP1Q9NZ08 941 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 GDE1Q9NZC3 331 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 TEKT2Q9UIF3 430 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 PTBP2Q9UKA9 531 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 MAN1B1Q9UKM7 699 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 TRAF3IP3Q9Y228 551 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 RBMX2Q9Y388 322 aaKnown RBP1.88□□□□□ -2.11
HMGB1-208ENST00000490788 TMED3Q9Y3Q3 217 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 GRIN2DO15399 1336 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 TTC41PQ6P2S7 1318 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 PHLPP2Q6ZVD8 1323 aa1.88□□□□□ -2.11
HMGB1-208ENST00000490788 TRIOO75962 3097 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 LOC400499M0QZD8 3231 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SHROOM3Q8TF72 1996 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 EDDM13A0A1B0GTR0 161 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TCRBV21S2A2A0A5A6 115 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 NEMP2A6NFY4 417 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 LRRIQ4A6NIV6 560 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TMEM114B3SHH9 223 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 C2CD4DB7Z1M9 353 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ATP6V1G2-DDX39BF2Z307 99 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 FBP2O00757 339 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 RAD51BO15315 384 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SULT1B1O43704 296 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ZBTB14O43829 449 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 IDH3BO43837 385 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 OR10H2O60403 315 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 RANBP6O60518 1105 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TGDSO95455 350 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 DUS4LO95620 317 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CLDN1O95832 211 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 IFNA14P01570 189 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 IGHV2-70P01814 119 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 GLAP06280 429 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 GPIP06744 558 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 GSTA2P09210 222 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 RAB40ALP0C0E4 278 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 DANCRP0C864 163 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 HAPLN1P10915 354 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TOP1P11387 765 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 DARSP14868 501 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ETS2P15036 469 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ATP6V1C1P21283 382 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 IL10P22301 178 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CRABP2P29373 138 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 GNA11P29992 359 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 AXLP30530 894 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 KRT2P35908 639 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TRIM23P36406 574 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SLC26A3P40879 764 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ASMTP46597 345 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 EIF2B2P49770 351 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ALDH3A2P51648 485 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CLCN4P51793 760 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CCNG1P51959 295 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 NKX2-5P52952 324 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ARFIP1P53367 373 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 RPS8P62241 208 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 NOP14P78316 857 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 RPP38P78345 283 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CCNA1P78396 465 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CYCSP99999 105 aaKnown RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 MYL7Q01449 175 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 GUCY2DQ02846 1103 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ENPEPQ07075 957 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 ZNF415Q09FC8 603 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TEFQ10587 303 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 TAF10Q12962 218 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SGCGQ13326 291 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 PLD1Q13393 1074 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 RIPK1Q13546 671 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 CYLC2Q14093 348 aaPredicted RBP1.87□□□□□ -2.11
HMGB1-208ENST00000490788 SPCS2Q15005 226 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 HERC3Q15034 1050 aa1.87□□□□□ -2.11
HMGB1-208ENST00000490788 NECTIN1Q15223 517 aa1.87□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms