RNA–Protein interactions for RNA: ENST00000483723.5

CLK3-204, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,749 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-204ENST00000483723 RASSF5Q8WWW0 418 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SLC35A4Q96G79 324 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 CNBD2Q96M20 576 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 MS4A4EQ96PG1 132 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 EPYCQ99645 322 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 YIPF4Q9BSR8 244 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 BTBD2Q9BX70 525 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 GAREM1Q9H706 876 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 ANKRA2Q9H9E1 313 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SMURF2Q9HAU4 748 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 MAT2BQ9NZL9 334 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 KLHL3Q9UH77 587 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 SLC6A14Q9UN76 642 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 PCDHGB5Q9Y5G0 923 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 CLDN16Q9Y5I7 305 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 CABIN1Q9Y6J0 2220 aa13.16□□□□□ -0.3
CLK3-204ENST00000483723 E2F6O75461 281 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 SERPINB7O75635 380 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 AGR2O95994 175 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 FESP07332 822 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 CHRM4P08173 479 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 THRBP10828 461 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 ITGA2P17301 1181 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 NELFEP18615 380 aaKnown RBP13.15□□□□□ -0.3
CLK3-204ENST00000483723 CAPGP40121 348 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 MAP3K8P41279 467 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 XCR1P46094 333 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 AVPR1BP47901 424 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 HMGA2P52926 109 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 ID2Q02363 134 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 KCNC4Q03721 635 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 MAP4K2Q12851 820 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 TRMT12Q53H54 448 aaKnown RBP13.15□□□□□ -0.3
CLK3-204ENST00000483723 SLC44A2Q8IWA5 706 aaPredicted RBP13.15□□□□□ -0.3
CLK3-204ENST00000483723 SMYD1Q8NB12 490 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 HOXB13Q92826 284 aaPredicted RBP13.15□□□□□ -0.3
CLK3-204ENST00000483723 MVB12AQ96EY5 273 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 TRNT1Q96Q11 434 aaKnown RBP13.15□□□□□ -0.3
CLK3-204ENST00000483723 BARD1Q99728 777 aaKnown RBP13.15□□□□□ -0.3
CLK3-204ENST00000483723 AMBRA1Q9C0C7 1298 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 ZNF768Q9H5H4 540 aaKnown RBP13.15□□□□□ -0.3
CLK3-204ENST00000483723 REEP1Q9H902 201 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 DDX18Q9NVP1 670 aaKnown RBP13.15□□□□□ -0.3
CLK3-204ENST00000483723 TMEFF2Q9UIK5 374 aaPredicted RBP13.15□□□□□ -0.3
CLK3-204ENST00000483723 CLCA2Q9UQC9 943 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 ENPP4Q9Y6X5 453 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 CCDC88CQ9P219 2028 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 NCOR1O75376 2440 aa13.15□□□□□ -0.3
CLK3-204ENST00000483723 ADAMTS20P59510 1910 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 DSPPQ9NZW4 1301 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 PCDHGA12O60330 932 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 DNAJB5O75953 348 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 BMP10O95393 424 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 CFIP05156 583 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 TNFRSF1BP20333 461 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 PRKACGP22612 351 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 OR1E2P47887 323 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 SEPHS1P49903 392 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 ARHGDIAP52565 204 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 MAPK10P53779 464 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 MYBPC1Q00872 1141 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 EPS8Q12929 822 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 COL9A2Q14055 689 aaPredicted RBP13.14□□□□□ -0.31
CLK3-204ENST00000483723 KCNAB1Q14722 419 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 PERM1Q5SV97 790 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 AP1ARQ63HQ0 302 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 ANKRD34AQ69YU3 496 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 ZNF574Q6ZN55 896 aaPredicted RBP13.14□□□□□ -0.31
CLK3-204ENST00000483723 ZNF605Q86T29 641 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 KRT73Q86Y46 540 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 SIMC1Q8NDZ2 872 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 OR4C15Q8NGM1 316 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 SPATA5L1Q9BVQ7 753 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 CALML5Q9NZT1 146 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 HCN3Q9P1Z3 774 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 MRPS33Q9Y291 106 aaKnown RBP13.14□□□□□ -0.31
CLK3-204ENST00000483723 SAMHD1Q9Y3Z3 626 aaKnown RBP13.14□□□□□ -0.31
CLK3-204ENST00000483723 TMEM184BQ9Y519 407 aaPredicted RBP13.14□□□□□ -0.31
CLK3-204ENST00000483723 U3KQV3 271 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 BDP1A6H8Y1 2624 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 RP1P56715 2156 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 SPTBP11277 2137 aa13.14□□□□□ -0.31
CLK3-204ENST00000483723 TGFBR3LH3BV60 316 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 ADAMDEC1O15204 470 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 OR2B3O76000 313 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 SP9P0CG40 484 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 FOLR1P15328 257 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 RHCEP18577 417 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 S1PR1P21453 382 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 NT5EP21589 574 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 ARL4DP49703 201 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 RFX4Q33E94 735 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 YOD1Q5VVQ6 348 aaPredicted RBP13.13□□□□□ -0.31
CLK3-204ENST00000483723 GUSBP11Q6P575 273 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 TMEM154Q6P9G4 183 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 BMP8AQ7Z5Y6 402 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 SLC16A11Q8NCK7 471 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 OR1L3Q8NH93 324 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 ADAMTS15Q8TE58 950 aa13.13□□□□□ -0.31
CLK3-204ENST00000483723 MMABQ96EY8 250 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms