RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 INAQ16352 499 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 DNAL1Q4LDG9 190 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 ATP1A1-AS1Q5TC04 95 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 SHEQ5VZ18 495 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 C3P1Q6ZMU1 363 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 GDPGP1Q6ZNW5 385 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 FRA10AC1Q70Z53 315 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 CENPUQ71F23 418 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 ASRGL1Q7L266 308 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 PEX26Q7Z412 305 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 TMEM126BQ8IUX1 230 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 ZNF713Q8N859 430 aaPredicted RBP4.89□□□□□ -1.63
USP40-213ENST00000483216 HEXDCQ8WVB3 486 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 DGCR14Q96DF8 476 aaKnown RBP4.89□□□□□ -1.63
USP40-213ENST00000483216 ATXN7L3BQ96GX2 97 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 SLC45A3Q96JT2 553 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 TTC25Q96NG3 672 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 TSPAN18Q96SJ8 248 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 LGMNQ99538 433 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 SELENOSQ9BQE4 189 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 SIKE1Q9BRV8 207 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 INPP5KQ9BT40 448 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 NAPBQ9H115 298 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 IARS2Q9NSE4 1012 aaKnown RBP4.89□□□□□ -1.63
USP40-213ENST00000483216 AGTPBP1Q9UPW5 1226 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 SH3GLB1Q9Y371 365 aa4.89□□□□□ -1.63
USP40-213ENST00000483216 CASZ1Q86V15 1759 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 A0A087WZ39 114 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 A0A1W2PPR1 153 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 HTR3EA5X5Y0 456 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 ASB14A6NK59 587 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 A8MVM7 634 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 F8VZ95 297 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 FLRT2O43155 660 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 TLX2O43763 284 aaPredicted RBP4.88□□□□□ -1.63
USP40-213ENST00000483216 FCGR3BO75015 233 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 SIX3O95343 332 aaPredicted RBP4.88□□□□□ -1.63
USP40-213ENST00000483216 PCCAP05165 728 aaPredicted RBP4.88□□□□□ -1.63
USP40-213ENST00000483216 FAM200BP0CF97 657 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 THEGLP0DJG4 465 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 S100A1P23297 94 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 PTPN4P29074 926 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 TLX1P31314 330 aaPredicted RBP4.88□□□□□ -1.63
USP40-213ENST00000483216 MS4A2Q01362 244 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 DR1Q01658 176 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 PAX8Q06710 450 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 KLHL30Q0D2K2 578 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 AP1B1Q10567 949 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 ASPHQ12797 758 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 CETN1Q12798 172 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 FAM189A2Q15884 450 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 CDO1Q16878 200 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 TRMT5Q32P41 509 aaKnown RBP4.88□□□□□ -1.63
USP40-213ENST00000483216 CCDC153Q494R4 210 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 FAM106AQ4KMX7 169 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 TXNRD3NBQ6F5E7 133 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 WDR59Q6PJI9 974 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 BTNL8Q6UX41 500 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 RGS9BPQ6ZS82 235 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 GPRIN3Q6ZVF9 776 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 FAM228AQ86W67 206 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 SMYD1Q8NB12 490 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 OR10G7Q8NGN6 311 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 CASP10Q92851 521 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 NXPE2Q96DL1 559 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 CNOT6LQ96LI5 555 aaKnown RBP4.88□□□□□ -1.63
USP40-213ENST00000483216 GAL3ST4Q96RP7 486 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 CHP1Q99653 195 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 ZNF184Q99676 751 aaPredicted RBP4.88□□□□□ -1.63
USP40-213ENST00000483216 ERP44Q9BS26 406 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 LRRC2Q9BYS8 371 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 DDX47Q9H0S4 455 aaKnown RBP4.88□□□□□ -1.63
USP40-213ENST00000483216 GLT8D2Q9H1C3 349 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 PARLQ9H300 379 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 C10orf88Q9H8K7 445 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 LMAN1LQ9HAT1 526 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 PARVBQ9HBI1 364 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 TRPV5Q9NQA5 729 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 STX18Q9P2W9 335 aaKnown RBP4.88□□□□□ -1.63
USP40-213ENST00000483216 BLOC1S6Q9UL45 172 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 ATP6V0A2Q9Y487 856 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 UBE4BO95155 1302 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 ANKRD36CQ5JPF3 1778 aa4.88□□□□□ -1.63
USP40-213ENST00000483216 TRAV18A0A075B6X5 111 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP4.87□□□□□ -1.63
USP40-213ENST00000483216 NKX6-3A6NJ46 265 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 FAM86B1E9PN63 330 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 NPIPA3F8WFD2 350 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 G3V2L1 256 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 MAGEB2O15479 319 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 PALMO75781 387 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 H2AFZP0C0S5 128 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 FAM86B2P0C5J1 330 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 TPBGLP0DKB5 382 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 TMOD1P28289 359 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 GNA11P29992 359 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 STX17P56962 302 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 NUP107P57740 925 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 DSCR10P59022 87 aa4.87□□□□□ -1.63
USP40-213ENST00000483216 PTENP60484 403 aa4.87□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms