RNA–Protein interactions for RNA: ENST00000478473.1

C9orf3-215, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 3

Gene C9orf3, Length 895 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-215ENST00000478473 LRRC3CA6NJW4 275 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 AQP7O14520 342 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 CDC40O60508 579 aaKnown RBP eCLIP21.53■■□□□ 1.044e-7■■■■□ 25.7
C9orf3-215ENST00000478473 HCN1O60741 890 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 TRIM3O75382 744 aaPredicted RBP21.53■■□□□ 1.04
C9orf3-215ENST00000478473 IL3P08700 152 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 PRPH2P23942 346 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 SLC10A1Q14973 349 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 LIPMQ5VYY2 423 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 HLA-DQA1Q5Y7H0 255 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 HOMEZQ8IX15 550 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 FAM13CQ8NE31 585 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 SPPL2AQ8TCT8 520 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 TRMOQ9BU70 441 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 ROPN1BQ9BZX4 212 aaPredicted RBP21.53■■□□□ 1.04
C9orf3-215ENST00000478473 ROPN1Q9HAT0 212 aaPredicted RBP21.53■■□□□ 1.04
C9orf3-215ENST00000478473 TNFRSF12AQ9NP84 129 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 ACKR4Q9NPB9 350 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 TAS2R7Q9NYW3 318 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 UTS2RQ9UKP6 389 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 BOKQ9UMX3 212 aaPredicted RBP21.53■■□□□ 1.04
C9orf3-215ENST00000478473 DTX4Q9Y2E6 619 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 PLLPQ9Y342 182 aa21.53■■□□□ 1.04
C9orf3-215ENST00000478473 SMIM23A6NLE4 172 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 TP53I11O14683 189 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 BCKDKO14874 412 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 ZNF500O60304 480 aaPredicted RBP21.52■■□□□ 1.04
C9orf3-215ENST00000478473 TPOP07202 933 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 ABCD3P28288 659 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 HTR1EP28566 365 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 GRNP28799 593 aaKnown RBP21.52■■□□□ 1.04
C9orf3-215ENST00000478473 NRG3P56975 720 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 ZNF628Q5EBL2 1059 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 EMBQ6PCB8 327 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 TRABD2AQ86V40 505 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 MARVELD2Q8N4S9 558 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 BANPQ8N9N5 519 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 HSPBAP1Q96EW2 488 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 ANGPTL4Q9BY76 406 aa21.52■■□□□ 1.04
C9orf3-215ENST00000478473 NXF5Q9H1B4 397 aaKnown RBP21.52■■□□□ 1.04
C9orf3-215ENST00000478473 C12orf65Q9H3J6 166 aaKnown RBP21.52■■□□□ 1.04
C9orf3-215ENST00000478473 ADGRG4Q8IZF6 3080 aa21.52■■□□□ 1.03
C9orf3-215ENST00000478473 GNG14A0A1W2PPG7 69 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 TO15178 435 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 ACOX3O15254 700 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 RSL1D1O76021 490 aaKnown RBP21.51■■□□□ 1.03
C9orf3-215ENST00000478473 PDE9AO76083 593 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 SNX4O95219 450 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 CLDN14O95500 239 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 UROSP10746 265 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 DRD5P21918 477 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 PPICP45877 212 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 ALDH9A1P49189 494 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 EMDP50402 254 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 DCAF7P61962 342 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 KCNJ2P63252 427 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 PCLAFQ15004 111 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 CDSNQ15517 529 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 TRMT12Q53H54 448 aaKnown RBP21.51■■□□□ 1.03
C9orf3-215ENST00000478473 CFAP157Q5JU67 520 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 TMEM211Q6ICI0 200 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 C4orf33Q8N1A6 199 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 ACBD4Q8NC06 268 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 CAVIN3Q969G5 261 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 APOPT1Q96IL0 206 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 SMC6Q96SB8 1091 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 BRINP2Q9C0B6 783 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 SLC35C2Q9NQQ7 365 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 PRODH2Q9UF12 536 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 PCDHGB3Q9Y5G1 929 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 LIPGQ9Y5X9 500 aa21.51■■□□□ 1.03
C9orf3-215ENST00000478473 BCAS2O75934 225 aaPredicted RBP21.5■■□□□ 1.03
C9orf3-215ENST00000478473 ABCB1P08183 1280 aaPredicted RBP21.5■■□□□ 1.03
C9orf3-215ENST00000478473 CELA3AP09093 270 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 ANXA4P09525 319 aaPredicted RBP21.5■■□□□ 1.03
C9orf3-215ENST00000478473 RFPL3SP0C7P2 107 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 FBXW4P57775 412 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 ZNF763Q0D2J5 394 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 KIAA0040Q15053 153 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 GXYLT1Q4G148 440 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 PRAMEF20Q5VT98 475 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 SCIMPQ6UWF3 145 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 TMEM64Q6YI46 380 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 NCCRP1Q6ZVX7 275 aaPredicted RBP21.5■■□□□ 1.03
C9orf3-215ENST00000478473 C10orf107Q8IVU9 208 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 SIMC1Q8NDZ2 872 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 OR2W6PQ8NHA6 318 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 LCORQ96JN0 433 aaPredicted RBP21.5■■□□□ 1.03
C9orf3-215ENST00000478473 DOHHQ9BU89 302 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 TMEM109Q9BVC6 243 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 GATA5Q9BWX5 397 aaPredicted RBP21.5■■□□□ 1.03
C9orf3-215ENST00000478473 MYNNQ9NPC7 610 aa21.5■■□□□ 1.03
C9orf3-215ENST00000478473 PLOD3O60568 738 aa21.49■■□□□ 1.03
C9orf3-215ENST00000478473 TRIM13O60858 407 aa21.49■■□□□ 1.03
C9orf3-215ENST00000478473 PPM1BO75688 479 aa21.49■■□□□ 1.03
C9orf3-215ENST00000478473 PCSK2P16519 638 aa21.49■■□□□ 1.03
C9orf3-215ENST00000478473 DDCP20711 480 aa21.49■■□□□ 1.03
C9orf3-215ENST00000478473 CASP3P42574 277 aa21.49■■□□□ 1.03
C9orf3-215ENST00000478473 RPP38P78345 283 aaKnown RBP21.49■■□□□ 1.03
C9orf3-215ENST00000478473 EXOSC7Q15024 291 aaKnown RBP21.49■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms