RNA–Protein interactions for RNA: ENST00000473854.5

CCDC39-203, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 487 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-203ENST00000473854 VPS18Q9P253 973 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 UVRAGQ9P2Y5 699 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 PRDM4Q9UKN5 801 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 PLCL2Q9UPR0 1127 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 NEU3Q9UQ49 428 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 PIN4Q9Y237 131 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 GINS2Q9Y248 185 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MFHAS1Q9Y4C4 1052 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 TRPV2Q9Y5S1 764 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ALG6Q9Y672 507 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 BZW2Q9Y6E2 419 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 MAP1BP46821 2468 aaKnown RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CLUHO75153 1309 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 RALGAPA1Q6GYQ0 2036 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 HEATR5AQ86XA9 2040 aa1.32□□□□□ -2.2
CCDC39-203ENST00000473854 ANKRD11Q6UB99 2663 aaPredicted RBP1.32□□□□□ -2.2
CCDC39-203ENST00000473854 CEP250Q9BV73 2442 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 ATMQ13315 3056 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 FREM3P0C091 2139 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 NUP210LQ5VU65 1888 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 SPTBN4Q9H254 2564 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 EML6Q6ZMW3 1958 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 KIAA1549Q9HCM3 1950 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 A0A1B0GUA9 196 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 ERICH4A6NGS2 130 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CASTOR2A6NHX0 329 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 A8MZ25 164 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 MIF4GDA9UHW6 222 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 MYO1GB0I1T2 1018 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 PTGES3LE9PB15 166 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 F8VP50 259 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 PI4K2BG5E9Z4 385 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 GOLGA8SH3BPF8 625 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CCDC188H7C350 402 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 I3L4J1 428 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CLDN5O00501 218 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 PIRO00625 290 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 POLR3GO15318 223 aaPredicted RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 MAGEB2O15479 319 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 NDUFS4O43181 175 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 PAPSS1O43252 624 aaPredicted RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 RIPK2O43353 540 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 SPOPO43791 374 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 MFSD11O43934 449 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 SHOX2O60902 331 aaPredicted RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 DUSP11O75319 330 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 ERLIN1O75477 346 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 BANF1O75531 89 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 FOXH1O75593 365 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 GJB3O75712 270 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 GRAP2O75791 330 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 DFFBO76075 338 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 BEST1O76090 585 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 BAIAP3O94812 1187 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 ERLIN2O94905 339 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 POP4O95707 220 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 LSM8O95777 96 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 SCGB1D1O95968 90 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 KRT14P02533 472 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 TNNC2P02585 160 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CHRNA1P02708 482 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 C1QAP02745 245 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CALB1P05937 261 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 PAEPP09466 180 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CCDC172P0C7W6 258 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 MYBL1P10243 752 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 GHRP10912 638 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 KCNE1P15382 129 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CDH2P19022 906 aaPredicted RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 WARSP23381 471 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 ACAT1P24752 427 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 PSMA2P25787 234 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 LMO2P25791 158 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 IVDP26440 423 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 TMOD1P28289 359 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 ACADLP28330 430 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 GCAP28676 217 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 ADORA2BP29275 332 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 MIPP30301 263 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 HLA-FP30511 346 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CD52P31358 61 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CHRNA3P32297 505 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 ARL3P36405 182 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 PPARGP37231 505 aaPredicted RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 COILP38432 576 aaPredicted RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 GARSP41250 739 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CDKN2BP42772 138 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 NSFP46459 744 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 RPL34P49207 117 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 FNTAP49354 379 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 RGS7P49802 495 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 NDST1P52848 882 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 CRYBB1P53674 252 aaPredicted RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 AP3M2P53677 418 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 PLTPP55058 493 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 VCPP55072 806 aaKnown RBP1.31□□□□□ -2.2
CCDC39-203ENST00000473854 UCNP55089 124 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 RWDD2BP57060 319 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 DYNLT1P63172 113 aa1.31□□□□□ -2.2
CCDC39-203ENST00000473854 DR1Q01658 176 aa1.31□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms